Detail information of GWHGAAZE005045


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCBI31429.30unnamed protein product [Vitis vinifera]
Swissprottr|Q9FKS8|LHT1_ARATH0.000000009Lysine histidine transporter 1
trEMBLtr|F6HND9|F6HND9_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB56158.1}
TAIR10AT3G54830.14E-141Transmembrane amino acid transporter family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene18188731823894-
GWHAAZE00000002mRNA18188731823894-
GWHAAZE00000002exon18238761823894-
GWHAAZE00000002exon18234451823659-
GWHAAZE00000002exon18232151823238-
GWHAAZE00000002exon18223861822566-
GWHAAZE00000002exon18220121822231-
GWHAAZE00000002exon18208911821026-
GWHAAZE00000002exon18203661820414-
GWHAAZE00000002exon18198811820180-
GWHAAZE00000002exon18196271819670-
GWHAAZE00000002exon18194551819517-
GWHAAZE00000002exon18188731819234-
GWHAAZE00000002CDS18238761823894-
GWHAAZE00000002CDS18234451823659-
GWHAAZE00000002CDS18232151823238-
GWHAAZE00000002CDS18223861822566-
GWHAAZE00000002CDS18220121822231-
GWHAAZE00000002CDS18208911821026-
GWHAAZE00000002CDS18203661820414-
GWHAAZE00000002CDS18198811820180-
GWHAAZE00000002CDS18196271819670-
GWHAAZE00000002CDS18194551819517-
GWHAAZE00000002CDS18191391819234-
GWHAAZE00000002three_prime_UTR18188731819138-
Transcript Sequence

Network for GWHGAAZE005045

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01490.19Aa_trans94381.40E-60
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K15015SLC32A, VGAT GABAergic synapse map04727
Retrograde endocannabinoid signalingmap04723
Synaptic vesicle cyclemap04721

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf65.456
SRR3591706second leaf16.369
SRR3591707mature leaf7.781
SRR3591708Shoot apex25.687
SRR3591709Stem36.470
SRR3591710White floral bud166.344
SRR3591711White flower76.378
SRR3591712Green floral bud84.695
SRR3591713Yellow flower45.205
SRP173429 SRR8316895Juvenile bud stage 30.821
SRR8316896Juvenile bud stage 42.109
SRR8316897Juvenile bud stage 27.983
SRR8316894Third green stage 29.808
SRR8316900Third green stage 63.574
SRR8316901Third green stage 79.548
SRR8316898Complete white stage 114.292
SRR8316899Complete white stage 99.774
SRR8316903Complete white stage 198.974
SRR8316902Silver flowering stage73.913
SRR8316904Silver flowering stage109.797
SRR8316905Silver flowering stage44.842
SRR8316906Gold flowering stage 81.319
SRR8316907Gold flowering stage 109.989
SRR8316908Gold flowering stage 71.548
SRP132670SRR6706286Control23.569
SRR6706287Light intensity 50%26.633
SRR6706288Light intensity 20%23.462
CNP0000432CNS0095592Slightly white alabastrum(diploid) 151.224
CNS0095593Slightly white alabastrum(diploid) 241.494
CNS0095594Slightly white alabastrum(diploid) 325.987
CNS0095595Whole white alabastrum(diploid) 238.134
CNS0095596Whole white alabastrum(diploid) 343.123
CNS0095597Whole white alabastrum(diploid) 428.459
CNS0095598Silvery flower (diploied) 1150.627
CNS0095599Silvery flower (diploied) 2142.370
CNS0095600Silvery flower (diploied) 3147.805
CNS0095601Golden flower (diploid) 161.345
CNS0095602Golden flower (diploid) 283.225
CNS0095603Golden flower (diploid) 380.213
CNS0095604Slightly white alabastrum(tetraploid) 146.551
CNS0095605Slightly white alabastrum(tetraploid) 252.730
CNS0095606Slightly white alabastrum(tetraploid) 371.383
CNS0095607Whole white alabastrum(tetraploid) 131.081
CNS0095608Whole white alabastrum(tetraploid) 224.124
CNS0095609Whole white alabastrum(tetraploid) 345.302
CNS0095610Silvery flower (tetraploid) 1119.575
CNS0095611Silvery flower (tetraploid) 2109.350
CNS0095612Silvery flower (tetraploid) 3210.991
CNS0095613Golden flower (tetraploid) 150.605
CNS0095614Golden flower (tetraploid) 252.834
CNS0095615Golden flower (tetraploid) 351.725
CRA001975CRR073297Stem 149.348
CRR073298Stem 250.585
CRR073299Stem 343.092
CRR073300Leaf 144.075
CRR073301Leaf 238.316
CRR073302Leaf 342.544
CRR073303Juvenile bud 136.105
CRR073304Juvenile bud 250.738
CRR073305Juvenile bud 347.440
CRR073306Third green 136.717
CRR073307Third green 229.048
CRR073308Third green 342.189
CRR073309Second white 128.583
CRR073310Second white 231.241
CRR073311Second white 321.349
CRR073312Silver flowering 113.890
CRR073313Silver flowering 214.331
CRR073314Silver flowering 313.221
CRR073315Gold flowering 17.962
CRR073316Gold flowering 29.844
CRR073317Gold flowering 38.900
CRR073318Tawny withering 16.347
CRR073319Tawny withering 29.760
CRR073320Tawny withering 38.978