Gene detail

Detail information of GWHGAAZE005048

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009594953.1	PREDICTED: U-box domain-containing protein 14 [Nicotiana tomentosiformis]
Swissprot	tr\|Q8VZ40\|PUB14_ARATH	U-box domain-containing protein 14
trEMBL	tr\|K4D599\|K4D599_SOLLC	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc11g008390.1.1}
TAIR10	AT3G54850.1	plant U-box 14

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	1951503	1954271	+
GWHAAZE00000002	mRNA	1951503	1954271	+
GWHAAZE00000002	exon	1951503	1951770	+
GWHAAZE00000002	exon	1952347	1952375	+
GWHAAZE00000002	exon	1952472	1952588	+
GWHAAZE00000002	exon	1952680	1953093	+
GWHAAZE00000002	exon	1953180	1954271	+
GWHAAZE00000002	CDS	1951503	1951770	+
GWHAAZE00000002	CDS	1952347	1952375	+
GWHAAZE00000002	CDS	1952472	1952588	+
GWHAAZE00000002	CDS	1952680	1953093	+
GWHAAZE00000002	CDS	1953180	1954271	+

Transcript Sequence
>GWHTAAZE005054 ATGGGTCCCATGGACGATCCAAAAGGTGAACTAGTGAGTCAACTCGTTGAGGCGATAAGGGATATATCTGGGGTTCCCGAGTGCACAAACGCTTCGAGAAGGATGTACAGTAATTTGGTGAGGAGGGTGAAGCTATTGAGCCCTCTCTTCGAGGAATTGAAGGACAGTGACCAACAGCAGCTGGGTGAAGACGAGGTTCAAGGCCTCCAGTCCTTGAAATTAGCTTTGAATTTCACCATGGACCTTCTCCGATCGGTCAATCAAGGCAAGTTTACAGGGATTGATCTTTTACCTGGTGCTCTTCAAATGGACAATATTGCAGCTAGATTCCATCAAGGGACGGAACAAATTGAAGCAGCACTGAGTCAGATTCCTTATGATAAACTTGACATTTCCGAAGAAGTTCGAGAACAGATTGAACTCGTGCATGCACAATTTAAAAGAGCGAAGGGAAAAATGGATACCCCTGATTTACAACTAGAGATCGATATATCTGTGGCGCAAAAGGAAAAAGATCCTGACCATGCAATTTTAAAGAGGATTTCAGAAAAGCTGCATCTTAGGACTGTAAATGATCTAAAGAGAGAGTCGCTTGCTATCCACGATATGGTTATATTAAGTAGTGGAGTTCCTGATGATTGCTTTGAGACGATGTCATTTCTCCTCAAGAAGCTAAAGGACTGTTTAGTGGTGGGAAACCCTGAAGCCGATGCCTCTGAAGGTGAAAAGAGCTTCATTAAGCATCAATCCCCTGTTATCCCAGATGATTTCCGATGCCCAATATCTCTGGAACTGATGAAAGATCCTGTGATTGTCTCTACTGGACAGACATATGAAAGGTCCTGCATTCAAAAATGGCTAGACGCTGGGCACAAGACCTGTCCTAAGACACAGCAAACTCTGTTGCACACGGCCCTAACACCCAACTACGTTTTGAAGAGTCTGATTGCTCTATGGTGTGAGAGCAATGGCGTTGAACTGCCCAAGAAACAAGGTAATTGTAGAAACAAAAGATACGGAAGCAGCGGTTCAGAATGTGATCGAAATGCCATTGATGCCTTGCTGCAGAAACTTGCGAACGGGAACTCAGAACAGCAAAGAGCAGCTGCTGGTGAGCTCCGATTGCTAGCAAAGAGAAACGCAGATAACAGAGTATGTATTGCTGAAGCTGGAGCCATTCCACTGCTTGTAGAGCTACTAGCCTCTACTGATCCTCGGACCCAAGAACATGCAGTTACTGCACTTTTGAACCTTTCCATAAACGAGGCCAACAAGGGTGCTATTGTTAATGCGGGTGCTATTCCCGATATAGTAGATGTGTTGAAAAACGGTAGCATGGAAGCAAGAGAAAATGCAGCTGCAACCCTTTTTAGTTTATCAGTTGTTGATGAGAACAAGGTAGCCATAGGAGCTGCAGGGGCTATACCGGCTCTTATCGATTTGCTGTGTCAAGGGACTCCAAGAGGGAAAAAAGATGCAGCCACTGCTATTTTTAACCTTTCGATCTATCAAGGAAACAAGGTGAGGGCTGTAAGGGCGGGGATTGTGCCGCCACTAATGAGACTGCTTAAGGATGCTGGTGGTGGAATGATGGATGAGGCACTAGCAATATTGGCTATACTAGCAAGCCATCAGGAAGGCAAAATAGCAATTGGACAGGCTGAGCCAATACCTGTTCTTGTAGAGGTAATAAGGACTGGTTCACCACGGAACCGGGAGAATGGAGCTGCTGTATTGTGGTCGCTCTGTGCTGGTGATGTGCAGTATTTGAAGGTAGCTAGGGAGCTTGGGGCTGAAGAGGTTTTGAAGGAACTGTCTGAGAATGGCACTGATAGAGCAAAGAGAAAAGCAGCAAGTGTCTTGGAACTACTCCAACGGGTTGAAGCGATTACTAATCCACAATTACCCCGAGAGGGGTGA

Network for GWHGAAZE005048

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04564.16	U-box	253	323	1.90E-21
PF00514.24	Arm	380	419	2.00E-10
PF00514.24	Arm	463	501	1.60E-06

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016567	biological_process	protein ubiquitination
GO:0005515	molecular_function	protein binding
GO:0004842	molecular_function	ubiquitin-protein transferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	45.462
	SRR3591706	second leaf	16.142
	SRR3591707	mature leaf	29.160
	SRR3591708	Shoot apex	16.517
	SRR3591709	Stem	51.858
	SRR3591710	White floral bud	50.733
	SRR3591711	White flower	72.382
	SRR3591712	Green floral bud	23.129
	SRR3591713	Yellow flower	53.811
SRP173429	SRR8316895	Juvenile bud stage	16.796
	SRR8316896	Juvenile bud stage	22.291
	SRR8316897	Juvenile bud stage	12.625
	SRR8316894	Third green stage	7.617
	SRR8316900	Third green stage	18.592
	SRR8316901	Third green stage	20.773
	SRR8316898	Complete white stage	17.640
	SRR8316899	Complete white stage	46.210
	SRR8316903	Complete white stage	30.829
	SRR8316902	Silver flowering stage	27.007
	SRR8316904	Silver flowering stage	32.563
	SRR8316905	Silver flowering stage	18.576
	SRR8316906	Gold flowering stage	65.775
	SRR8316907	Gold flowering stage	58.111
	SRR8316908	Gold flowering stage	63.501
SRP132670	SRR6706286	Control	25.894
	SRR6706287	Light intensity 50%	25.949
	SRR6706288	Light intensity 20%	22.457
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.328
	CNS0095593	Slightly white alabastrum(diploid) 2	18.926
	CNS0095594	Slightly white alabastrum(diploid) 3	19.127
	CNS0095595	Whole white alabastrum(diploid) 2	14.408
	CNS0095596	Whole white alabastrum(diploid) 3	11.172
	CNS0095597	Whole white alabastrum(diploid) 4	13.398
	CNS0095598	Silvery flower (diploied) 1	46.845
	CNS0095599	Silvery flower (diploied) 2	42.240
	CNS0095600	Silvery flower (diploied) 3	72.773
	CNS0095601	Golden flower (diploid) 1	42.150
	CNS0095602	Golden flower (diploid) 2	73.435
	CNS0095603	Golden flower (diploid) 3	70.134
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.643
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.790
	CNS0095606	Slightly white alabastrum(tetraploid) 3	19.690
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.012
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.123
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.086
	CNS0095610	Silvery flower (tetraploid) 1	52.992
	CNS0095611	Silvery flower (tetraploid) 2	61.558
	CNS0095612	Silvery flower (tetraploid) 3	82.174
	CNS0095613	Golden flower (tetraploid) 1	36.145
	CNS0095614	Golden flower (tetraploid) 2	48.728
	CNS0095615	Golden flower (tetraploid) 3	79.784
CRA001975	CRR073297	Stem 1	29.851
	CRR073298	Stem 2	27.114
	CRR073299	Stem 3	25.023
	CRR073300	Leaf 1	30.913
	CRR073301	Leaf 2	31.479
	CRR073302	Leaf 3	21.857
	CRR073303	Juvenile bud 1	30.069
	CRR073304	Juvenile bud 2	33.368
	CRR073305	Juvenile bud 3	47.794
	CRR073306	Third green 1	82.913
	CRR073307	Third green 2	69.331
	CRR073308	Third green 3	79.185
	CRR073309	Second white 1	58.096
	CRR073310	Second white 2	62.647
	CRR073311	Second white 3	64.413
	CRR073312	Silver flowering 1	75.900
	CRR073313	Silver flowering 2	82.091
	CRR073314	Silver flowering 3	74.547
	CRR073315	Gold flowering 1	18.888
	CRR073316	Gold flowering 2	30.285
	CRR073317	Gold flowering 3	26.017
	CRR073318	Tawny withering 1	37.123
	CRR073319	Tawny withering 2	53.682
	CRR073320	Tawny withering 3	35.945