Detail information of GWHGAAZE005049


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010103554.10Vacuolar protein sorting-associated protein 33-like protein [Morus notabilis]
Swissprottr|Q94KJ7|VPS33_ARATH0Vacuolar protein-sorting-associated protein 33 homolog
trEMBLtr|W9RWW6|W9RWW6_9ROSA0Vacuolar protein sorting-associated protein 33-like protein {ECO:0000313|EMBL:EXB96214.1}
TAIR10AT3G54860.10Sec1/munc18-like (SM) proteins superfamily

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene19552141971526-
GWHAAZE00000002mRNA19552141971526-
GWHAAZE00000002exon19714741971526-
GWHAAZE00000002exon19713461971385-
GWHAAZE00000002exon19711451971225-
GWHAAZE00000002exon19707191970913-
GWHAAZE00000002exon19705031970613-
GWHAAZE00000002exon19703451970410-
GWHAAZE00000002exon19700511970158-
GWHAAZE00000002exon19699151969959-
GWHAAZE00000002exon19637491963805-
GWHAAZE00000002exon19628641962958-
GWHAAZE00000002exon19623481962399-
GWHAAZE00000002exon19621461962202-
GWHAAZE00000002exon19617381961818-
GWHAAZE00000002exon19615451961651-
GWHAAZE00000002exon19602401960321-
GWHAAZE00000002exon19600911960161-
GWHAAZE00000002exon19595951959675-
GWHAAZE00000002exon19592051959262-
GWHAAZE00000002exon19586201958679-
GWHAAZE00000002exon19578931957954-
GWHAAZE00000002exon19562281956260-
GWHAAZE00000002exon19560471956140-
GWHAAZE00000002exon19552141955303-
GWHAAZE00000002CDS19714741971526-
GWHAAZE00000002CDS19713461971385-
GWHAAZE00000002CDS19711451971225-
GWHAAZE00000002CDS19707191970913-
GWHAAZE00000002CDS19705031970613-
GWHAAZE00000002CDS19703451970410-
GWHAAZE00000002CDS19700511970158-
GWHAAZE00000002CDS19699151969959-
GWHAAZE00000002CDS19637491963805-
GWHAAZE00000002CDS19628641962958-
GWHAAZE00000002CDS19623481962399-
GWHAAZE00000002CDS19621461962202-
GWHAAZE00000002CDS19617381961818-
GWHAAZE00000002CDS19615451961651-
GWHAAZE00000002CDS19602401960321-
GWHAAZE00000002CDS19600911960161-
GWHAAZE00000002CDS19595951959675-
GWHAAZE00000002CDS19592051959262-
GWHAAZE00000002CDS19586201958679-
GWHAAZE00000002CDS19578931957954-
GWHAAZE00000002CDS19562281956260-
GWHAAZE00000002CDS19560471956140-
GWHAAZE00000002CDS19552141955303-
Transcript Sequence

Network for GWHGAAZE005049

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00995.24Sec1363791.40E-67
PF00995.24Sec13835851.10E-27
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K20182VPS33A Autophagy - yeast map04138

Gene Ontology

GO term OntologyName
GO:0006904biological_processvesicle docking involved in exocytosis
GO:0016192biological_processvesicle-mediated transport

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf62.438
SRR3591706second leaf32.890
SRR3591707mature leaf27.305
SRR3591708Shoot apex42.118
SRR3591709Stem45.569
SRR3591710White floral bud36.141
SRR3591711White flower36.239
SRR3591712Green floral bud43.030
SRR3591713Yellow flower30.572
SRP173429 SRR8316895Juvenile bud stage 29.014
SRR8316896Juvenile bud stage 40.155
SRR8316897Juvenile bud stage 21.422
SRR8316894Third green stage 20.348
SRR8316900Third green stage 55.456
SRR8316901Third green stage 52.412
SRR8316898Complete white stage 27.376
SRR8316899Complete white stage 72.668
SRR8316903Complete white stage 39.119
SRR8316902Silver flowering stage17.934
SRR8316904Silver flowering stage25.491
SRR8316905Silver flowering stage11.564
SRR8316906Gold flowering stage 36.378
SRR8316907Gold flowering stage 38.824
SRR8316908Gold flowering stage 33.464
SRP132670SRR6706286Control61.114
SRR6706287Light intensity 50%64.433
SRR6706288Light intensity 20%70.442
CNP0000432CNS0095592Slightly white alabastrum(diploid) 137.895
CNS0095593Slightly white alabastrum(diploid) 239.118
CNS0095594Slightly white alabastrum(diploid) 333.314
CNS0095595Whole white alabastrum(diploid) 236.152
CNS0095596Whole white alabastrum(diploid) 339.258
CNS0095597Whole white alabastrum(diploid) 435.523
CNS0095598Silvery flower (diploied) 136.834
CNS0095599Silvery flower (diploied) 237.762
CNS0095600Silvery flower (diploied) 347.555
CNS0095601Golden flower (diploid) 131.066
CNS0095602Golden flower (diploid) 237.204
CNS0095603Golden flower (diploid) 334.514
CNS0095604Slightly white alabastrum(tetraploid) 138.847
CNS0095605Slightly white alabastrum(tetraploid) 233.788
CNS0095606Slightly white alabastrum(tetraploid) 357.100
CNS0095607Whole white alabastrum(tetraploid) 128.218
CNS0095608Whole white alabastrum(tetraploid) 227.995
CNS0095609Whole white alabastrum(tetraploid) 348.806
CNS0095610Silvery flower (tetraploid) 148.005
CNS0095611Silvery flower (tetraploid) 246.986
CNS0095612Silvery flower (tetraploid) 340.752
CNS0095613Golden flower (tetraploid) 125.828
CNS0095614Golden flower (tetraploid) 237.462
CNS0095615Golden flower (tetraploid) 328.505
CRA001975CRR073297Stem 146.350
CRR073298Stem 243.625
CRR073299Stem 340.016
CRR073300Leaf 153.555
CRR073301Leaf 247.127
CRR073302Leaf 347.210
CRR073303Juvenile bud 159.052
CRR073304Juvenile bud 241.588
CRR073305Juvenile bud 357.080
CRR073306Third green 125.685
CRR073307Third green 226.423
CRR073308Third green 324.396
CRR073309Second white 127.527
CRR073310Second white 221.174
CRR073311Second white 315.681
CRR073312Silver flowering 112.914
CRR073313Silver flowering 211.045
CRR073314Silver flowering 311.931
CRR073315Gold flowering 118.674
CRR073316Gold flowering 231.967
CRR073317Gold flowering 314.483
CRR073318Tawny withering 130.016
CRR073319Tawny withering 224.191
CRR073320Tawny withering 331.991