Gene detail

Detail information of GWHGAAZE005058

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010267207.1	PREDICTED: protein FLOWERING LOCUS D [Nelumbo nucifera]
Swissprot	tr\|Q9CAE3\|FLD_ARATH	Protein FLOWERING LOCUS D
trEMBL	tr\|M5XIX0\|M5XIX0_PRUPE	Uncharacterized protein {ECO:0000313\|EMBL:EMJ21458.1}
TAIR10	AT3G10390.1	Flavin containing amine oxidoreductase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	2121814	2123364	+
GWHAAZE00000002	mRNA	2121814	2123364	+
GWHAAZE00000002	exon	2121814	2123364	+
GWHAAZE00000002	CDS	2121814	2123364	+

Transcript Sequence
>GWHTAAZE005064 ATGGAAAATTCTACTACTACTTTCAATCTTAACAACAATACAAACAACGTTAAACGAGCTGGCGGTGCTGACATATCTGATGAAATTATTGTGATCAACAAAGAAGCCACTGCAGAAGCGTTGGTCGCCCTTTCTTCAGGGTTTCCGGCCGATTCCCTTACCGATGAAGAAATAGATGCAGGGGTTGTTTCTGTGGTTGGTGGAATTGAACAGGTTAATTATATATTAATCAGAAACCACATTATTACCAAATGGCGTGAGAATGTTATGAATTGGGTGACAAAAGAAATGTTTCTTGATGTTATACCTGCACATTGTACTACCCTTTTGGACTCTGCTTATAATTATTTGGTTTCACATGGGTATATTAATTTTGGGGTTGCTCCGGCTATAAAGGAGAAGATTATGGCCGAACCTAGCAAACCCCGTGTGATTGTGATTGGGGCAGGACTTGCCGGATTGGCTGCTGCAAGGCAGTTATTGTCGTTCGGGTTTAAAGTGATTGTTTTGGAGGGCAGGAAGCGAGCTGGTGGGCGTGTTTATACCATGAAGATAAATGGGGAGAATAATGGGGAGAGTAAGGAGGCAGCTGCAGATTTAGGAGGTAGCGTGTTGACAGGGACACTGGGGAACCCTCTTGGTATTTTGGCAAGGCAGTTGTCATACCCTCTTCATAAGGTGAGAGATAAGTGTCCACTTTATACCGTGGATGGTAAACCTGTTGACCAGGGTATGGATTTAAAAGTTGAAACTGCTTTTAACCGGATTTTGGAGAAGGCCAGCAAGCTTAGGCAGTTGATGGGTGAAGTTTCGCAGGATGTTTCTCTTGGGGCGGCTCTGGAGACATTCTGGCAAGTCTATGGGGATGATGTGAATGCCGAGGAGATGAACTTATATAACTGGCATCTTGCAAATTTGGAATATGCAAATGCGGGTTTGCTTTCCAAGCTTTCACTTGCATTCTGGGACCAAGATGATCCGTATGATATGGGAGGAGACCATTGCTTCTTACCTGGAGGGAACGGACGGTTGGTTCAGGCTTTGTCAGAAAATGTGCCGATCCTATATGAGAAAACTGTACACACAATTCGTTATGGTAGTGATGGAGTGCAGGTTCTTTGTGGGAACCAGGTCTTTGAGGGCGATATGGCACTATGTACCGTTTCTCTAGGGGTTTTGAAGAGTGGTTCTATTAAGTTTAATCCAGAGTTGCCTCAGAGGAAGCTTGATGGGATAAAGAGGTTAGGTTTTGGTTTGTTAAACAAGGTTGCGATACTTTTTCCGTATGTGTTTTGGGGTACTGATCTGGACACGTTTGGGCATCTCTCCAATAACCCGAGCGATCGGGGGAAGTTCTTTTTATTCTATAGCTATGCCAGTGTATCTGGTGGTCCCCTCTTGATTGCATTGGTAGCAGGAGAAGCTGCACATGAGTTTGAGAGCATGCCCGCTACTGACGCTGTGTCCCGGGTTCTTGAGATTCTTAGAGGTACATCTCTTTTAAGAATGGATTTACGTACTGGTGTTTCTATGTTTATGTTCCCTATCTAG

Network for GWHGAAZE005058

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04433.18	SWIRM	47	125	1.80E-12
PF01593.25	Amino_oxidase	151	496	1.50E-61

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	SWI/SNF-SWI3

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0005515	molecular_function	protein binding
GO:0016491	molecular_function	oxidoreductase activity
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.882
	SRR3591706	second leaf	6.488
	SRR3591707	mature leaf	10.668
	SRR3591708	Shoot apex	7.587
	SRR3591709	Stem	6.424
	SRR3591710	White floral bud	8.815
	SRR3591711	White flower	10.669
	SRR3591712	Green floral bud	7.627
	SRR3591713	Yellow flower	6.639
SRP173429	SRR8316895	Juvenile bud stage	4.712
	SRR8316896	Juvenile bud stage	6.088
	SRR8316897	Juvenile bud stage	2.559
	SRR8316894	Third green stage	2.801
	SRR8316900	Third green stage	7.828
	SRR8316901	Third green stage	6.147
	SRR8316898	Complete white stage	2.668
	SRR8316899	Complete white stage	8.931
	SRR8316903	Complete white stage	6.379
	SRR8316902	Silver flowering stage	2.916
	SRR8316904	Silver flowering stage	5.103
	SRR8316905	Silver flowering stage	1.865
	SRR8316906	Gold flowering stage	6.882
	SRR8316907	Gold flowering stage	6.579
	SRR8316908	Gold flowering stage	6.716
SRP132670	SRR6706286	Control	10.383
	SRR6706287	Light intensity 50%	9.099
	SRR6706288	Light intensity 20%	9.347
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.566
	CNS0095593	Slightly white alabastrum(diploid) 2	2.181
	CNS0095594	Slightly white alabastrum(diploid) 3	2.558
	CNS0095595	Whole white alabastrum(diploid) 2	2.456
	CNS0095596	Whole white alabastrum(diploid) 3	2.554
	CNS0095597	Whole white alabastrum(diploid) 4	2.807
	CNS0095598	Silvery flower (diploied) 1	5.679
	CNS0095599	Silvery flower (diploied) 2	3.225
	CNS0095600	Silvery flower (diploied) 3	11.883
	CNS0095601	Golden flower (diploid) 1	5.177
	CNS0095602	Golden flower (diploid) 2	10.898
	CNS0095603	Golden flower (diploid) 3	10.991
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.703
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.314
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.895
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.890
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.189
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.461
	CNS0095610	Silvery flower (tetraploid) 1	9.534
	CNS0095611	Silvery flower (tetraploid) 2	10.678
	CNS0095612	Silvery flower (tetraploid) 3	9.661
	CNS0095613	Golden flower (tetraploid) 1	4.173
	CNS0095614	Golden flower (tetraploid) 2	8.950
	CNS0095615	Golden flower (tetraploid) 3	9.260
CRA001975	CRR073297	Stem 1	7.826
	CRR073298	Stem 2	7.108
	CRR073299	Stem 3	6.007
	CRR073300	Leaf 1	6.313
	CRR073301	Leaf 2	5.024
	CRR073302	Leaf 3	4.548
	CRR073303	Juvenile bud 1	2.859
	CRR073304	Juvenile bud 2	3.069
	CRR073305	Juvenile bud 3	6.026
	CRR073306	Third green 1	3.402
	CRR073307	Third green 2	1.916
	CRR073308	Third green 3	2.786
	CRR073309	Second white 1	1.772
	CRR073310	Second white 2	2.498
	CRR073311	Second white 3	3.813
	CRR073312	Silver flowering 1	2.905
	CRR073313	Silver flowering 2	2.849
	CRR073314	Silver flowering 3	2.914
	CRR073315	Gold flowering 1	2.793
	CRR073316	Gold flowering 2	3.692
	CRR073317	Gold flowering 3	3.341
	CRR073318	Tawny withering 1	4.201
	CRR073319	Tawny withering 2	2.417
	CRR073320	Tawny withering 3	2.195