Gene detail

Detail information of GWHGAAZE005076

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008233250.1	2.3115E-119	PREDICTED: pullulanase 1, chloroplastic [Prunus mume]
Swissprot	tr\|Q8GTR4\|PULA1_ARATH	6E-104	Pullulanase 1, chloroplastic (Precursor)
trEMBL	tr\|A0A067E9I8\|A0A067E9I8_CITSI	4E-119	Uncharacterized protein {ECO:0000313\|EMBL:KDO47571.1} (Fragment)
TAIR10	AT5G04360.1	3E-89	limit dextrinase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	2325627	2328899	+
GWHAAZE00000002	mRNA	2325627	2328899	+
GWHAAZE00000002	exon	2325627	2325715	+
GWHAAZE00000002	exon	2325982	2326059	+
GWHAAZE00000002	exon	2326155	2326293	+
GWHAAZE00000002	exon	2327999	2328108	+
GWHAAZE00000002	exon	2328200	2328299	+
GWHAAZE00000002	exon	2328456	2328899	+
GWHAAZE00000002	CDS	2325627	2325715	+
GWHAAZE00000002	CDS	2325982	2326059	+
GWHAAZE00000002	CDS	2326155	2326293	+
GWHAAZE00000002	CDS	2327999	2328108	+
GWHAAZE00000002	CDS	2328200	2328299	+
GWHAAZE00000002	CDS	2328456	2328566	+
GWHAAZE00000002	three_prime_UTR	2328567	2328899	+

Transcript Sequence
>GWHTAAZE005082 GGAATACCCTTTTTCCATTCTGGGGATGAGATTCTGCGCTCAAAGTCACTAGACCGTGATTCATATAATTCCAGTGATTGGTTCAACAGGTTAGACTTCAGCTACAGTTCTAACAACTGGGGTGTTGGCCTTCCTCCAAAAGAGAAAAATGAAAATAACTGGCCGCTAATTAAACCCAGATTGGCAGATCCAACCTTCAAGCCTCAGAAAAGTCACATACTTGCTGCTGTAGAAAATTTTAAAAACATGTTACATATCAGATACTCTTCTCCCCTCTTCCGTTTGAGGACAGCAAATGCAATACAGGAGCGTGTGAGATTTCATAACACTGGCCCGTCATGGGTCCCTGGTGTCATAGCGATGAGCATAGAAGATGGTCATGATGGTTTTCCAGGGTTATCTCAGCTGGATCCAATCTATTCATATATTGTTGTTATCATCAATGTATGCCCCACTGATGCATCATTTGTGATCCCTACACTAAAGGAGAGGACTTTACAGTTGCATCCAGTACAGATGATGTCGATTGACAATATCGTCAAGAACTCGAAGTATGATGCGTCCTCAGGATGCTTCGTGGTGCCTTCAAGGACAACATGTGTATTTGTGGAGCCTCGGAATATTTGATTCTTGTGTTATTTTGAATAAAGCAAACATCGGATAGTGAAAGCGTTATATTTCTCAGAAGCACAGTAGTTTTTCTGTTTGAAAGAGATCAATGTAACTTCAACCAGAGCACAATTTGTAAGTAGAATATGCTTCTATATCCTTGGGTAGGGGAAATGGCGAGCAATTCATTTGTTTAGGGGAAAATGGTCTTGCAAAAATAGGTGGGGATTGGTGAATAAGGCGTACTAGTGTACCTTTTTATAACATTATATGGCTAACATTCAAATCTACATTGGATCTCTAGCTGTAATAGTAAAATGATATTCTATTAAATAAAACTATTCCAGGTCC

Network for GWHGAAZE005076

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0035

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF11852.9	DUF3372	35	205	2.40E-64

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	39.402
	SRR3591706	second leaf	40.315
	SRR3591707	mature leaf	41.545
	SRR3591708	Shoot apex	40.841
	SRR3591709	Stem	46.947
	SRR3591710	White floral bud	19.594
	SRR3591711	White flower	31.033
	SRR3591712	Green floral bud	20.092
	SRR3591713	Yellow flower	31.405
SRP173429	SRR8316895	Juvenile bud stage	32.854
	SRR8316896	Juvenile bud stage	43.893
	SRR8316897	Juvenile bud stage	25.524
	SRR8316894	Third green stage	13.805
	SRR8316900	Third green stage	25.788
	SRR8316901	Third green stage	33.579
	SRR8316898	Complete white stage	9.722
	SRR8316899	Complete white stage	36.125
	SRR8316903	Complete white stage	18.749
	SRR8316902	Silver flowering stage	13.428
	SRR8316904	Silver flowering stage	17.117
	SRR8316905	Silver flowering stage	7.585
	SRR8316906	Gold flowering stage	29.803
	SRR8316907	Gold flowering stage	28.542
	SRR8316908	Gold flowering stage	34.140
SRP132670	SRR6706286	Control	16.573
	SRR6706287	Light intensity 50%	18.195
	SRR6706288	Light intensity 20%	18.687
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	43.352
	CNS0095593	Slightly white alabastrum(diploid) 2	40.130
	CNS0095594	Slightly white alabastrum(diploid) 3	47.576
	CNS0095595	Whole white alabastrum(diploid) 2	33.565
	CNS0095596	Whole white alabastrum(diploid) 3	27.655
	CNS0095597	Whole white alabastrum(diploid) 4	30.473
	CNS0095598	Silvery flower (diploied) 1	45.565
	CNS0095599	Silvery flower (diploied) 2	42.050
	CNS0095600	Silvery flower (diploied) 3	20.482
	CNS0095601	Golden flower (diploid) 1	54.141
	CNS0095602	Golden flower (diploid) 2	24.860
	CNS0095603	Golden flower (diploid) 3	22.732
	CNS0095604	Slightly white alabastrum(tetraploid) 1	37.062
	CNS0095605	Slightly white alabastrum(tetraploid) 2	34.514
	CNS0095606	Slightly white alabastrum(tetraploid) 3	38.622
	CNS0095607	Whole white alabastrum(tetraploid) 1	25.593
	CNS0095608	Whole white alabastrum(tetraploid) 2	24.612
	CNS0095609	Whole white alabastrum(tetraploid) 3	26.350
	CNS0095610	Silvery flower (tetraploid) 1	29.494
	CNS0095611	Silvery flower (tetraploid) 2	20.973
	CNS0095612	Silvery flower (tetraploid) 3	25.837
	CNS0095613	Golden flower (tetraploid) 1	27.655
	CNS0095614	Golden flower (tetraploid) 2	28.631
	CNS0095615	Golden flower (tetraploid) 3	18.935
CRA001975	CRR073297	Stem 1	31.190
	CRR073298	Stem 2	26.939
	CRR073299	Stem 3	12.187
	CRR073300	Leaf 1	19.197
	CRR073301	Leaf 2	18.365
	CRR073302	Leaf 3	7.712
	CRR073303	Juvenile bud 1	9.632
	CRR073304	Juvenile bud 2	3.561
	CRR073305	Juvenile bud 3	14.216
	CRR073306	Third green 1	2.584
	CRR073307	Third green 2	2.245
	CRR073308	Third green 3	2.565
	CRR073309	Second white 1	5.244
	CRR073310	Second white 2	5.735
	CRR073311	Second white 3	6.036
	CRR073312	Silver flowering 1	6.424
	CRR073313	Silver flowering 2	2.404
	CRR073314	Silver flowering 3	4.676
	CRR073315	Gold flowering 1	15.743
	CRR073316	Gold flowering 2	25.922
	CRR073317	Gold flowering 3	8.409
	CRR073318	Tawny withering 1	20.218
	CRR073319	Tawny withering 2	27.020
	CRR073320	Tawny withering 3	26.239