Detail information of GWHGAAZE005077


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007010041.11.39301E-72C2H2-type zinc finger family protein, putative [Theobroma cacao]
Swissprottr|Q681X4|ZAT5_ARATH3E-46Zinc finger protein ZAT5
trEMBLtr|A0A061FP50|A0A061FP50_THECC5E-73C2H2-type zinc finger family protein, putative {ECO:0000313|EMBL:EOY18851.1}
TAIR10AT5G04390.13E-39C2H2-type zinc finger family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene23391112340181+
GWHAAZE00000002mRNA23391112340181+
GWHAAZE00000002exon23391112340181+
GWHAAZE00000002CDS23391112340181+
Transcript Sequence

Network for GWHGAAZE005077

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13912.7zf-C2H2_61241497.90E-13
PF13912.7zf-C2H2_62082339.00E-12
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyC2H2

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.166
SRR3591706second leaf0.070
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.000
SRR3591709Stem1.214
SRR3591710White floral bud4.894
SRR3591711White flower0.645
SRR3591712Green floral bud0.000
SRR3591713Yellow flower0.121
SRP173429 SRR8316895Juvenile bud stage 0.081
SRR8316896Juvenile bud stage 0.000
SRR8316897Juvenile bud stage 0.000
SRR8316894Third green stage 0.060
SRR8316900Third green stage 0.083
SRR8316901Third green stage 0.202
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.081
SRR8316903Complete white stage 0.795
SRR8316902Silver flowering stage0.411
SRR8316904Silver flowering stage0.500
SRR8316905Silver flowering stage0.064
SRR8316906Gold flowering stage 0.454
SRR8316907Gold flowering stage 0.105
SRR8316908Gold flowering stage 0.047
SRP132670SRR6706286Control0.253
SRR6706287Light intensity 50%0.723
SRR6706288Light intensity 20%0.160
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.041
CNS0095593Slightly white alabastrum(diploid) 20.032
CNS0095594Slightly white alabastrum(diploid) 30.362
CNS0095595Whole white alabastrum(diploid) 20.165
CNS0095596Whole white alabastrum(diploid) 30.000
CNS0095597Whole white alabastrum(diploid) 40.000
CNS0095598Silvery flower (diploied) 10.757
CNS0095599Silvery flower (diploied) 21.068
CNS0095600Silvery flower (diploied) 30.505
CNS0095601Golden flower (diploid) 10.433
CNS0095602Golden flower (diploid) 20.472
CNS0095603Golden flower (diploid) 30.556
CNS0095604Slightly white alabastrum(tetraploid) 10.000
CNS0095605Slightly white alabastrum(tetraploid) 20.000
CNS0095606Slightly white alabastrum(tetraploid) 30.223
CNS0095607Whole white alabastrum(tetraploid) 10.115
CNS0095608Whole white alabastrum(tetraploid) 20.000
CNS0095609Whole white alabastrum(tetraploid) 30.000
CNS0095610Silvery flower (tetraploid) 10.522
CNS0095611Silvery flower (tetraploid) 21.366
CNS0095612Silvery flower (tetraploid) 31.627
CNS0095613Golden flower (tetraploid) 10.187
CNS0095614Golden flower (tetraploid) 20.083
CNS0095615Golden flower (tetraploid) 30.911
CRA001975CRR073297Stem 10.689
CRR073298Stem 20.368
CRR073299Stem 30.471
CRR073300Leaf 10.161
CRR073301Leaf 20.530
CRR073302Leaf 30.000
CRR073303Juvenile bud 10.188
CRR073304Juvenile bud 24.578
CRR073305Juvenile bud 30.842
CRR073306Third green 14.085
CRR073307Third green 26.318
CRR073308Third green 34.881
CRR073309Second white 10.316
CRR073310Second white 20.353
CRR073311Second white 30.433
CRR073312Silver flowering 13.821
CRR073313Silver flowering 23.287
CRR073314Silver flowering 30.825
CRR073315Gold flowering 12.834
CRR073316Gold flowering 20.582
CRR073317Gold flowering 30.933
CRR073318Tawny withering 13.206
CRR073319Tawny withering 22.667
CRR073320Tawny withering 32.740