Detail information of GWHGAAZE005098


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDO99847.10unnamed protein product [Coffea canephora]
Swissprottr|F4J3T8|MYTM1_ARATH0Phosphatidylinositol-3-phosphatase myotubularin-1
trEMBLtr|A0A068TUY0|A0A068TUY0_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_4 {ECO:0000313|EMBL:CDO99847.1}
TAIR10AT3G10550.10Myotubularin-like phosphatases II superfamily

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene26665002693136-
GWHAAZE00000002mRNA26665002693136-
GWHAAZE00000002exon26929512693136-
GWHAAZE00000002exon26927792692850-
GWHAAZE00000002exon26911092691183-
GWHAAZE00000002exon26858972685966-
GWHAAZE00000002exon26852282685277-
GWHAAZE00000002exon26817902682079-
GWHAAZE00000002exon26815912681664-
GWHAAZE00000002exon26814472681510-
GWHAAZE00000002exon26811952681260-
GWHAAZE00000002exon26808282680927-
GWHAAZE00000002exon26806152680728-
GWHAAZE00000002exon26799592680128-
GWHAAZE00000002exon26788292679047-
GWHAAZE00000002exon26706082670692-
GWHAAZE00000002exon26698442670071-
GWHAAZE00000002exon26689332668992-
GWHAAZE00000002exon26685202668584-
GWHAAZE00000002exon26674452667686-
GWHAAZE00000002exon26665002667005-
GWHAAZE00000002CDS26929512693136-
GWHAAZE00000002CDS26927792692850-
GWHAAZE00000002CDS26911092691183-
GWHAAZE00000002CDS26858972685966-
GWHAAZE00000002CDS26852282685277-
GWHAAZE00000002CDS26817902682079-
GWHAAZE00000002CDS26815912681664-
GWHAAZE00000002CDS26814472681510-
GWHAAZE00000002CDS26811952681260-
GWHAAZE00000002CDS26808282680927-
GWHAAZE00000002CDS26806152680728-
GWHAAZE00000002CDS26799592680128-
GWHAAZE00000002CDS26788292679047-
GWHAAZE00000002CDS26706082670692-
GWHAAZE00000002CDS26698442670071-
GWHAAZE00000002CDS26689332668992-
GWHAAZE00000002CDS26685202668584-
GWHAAZE00000002CDS26674452667686-
GWHAAZE00000002CDS26665002667005-
Transcript Sequence

Network for GWHGAAZE005098

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF06602.15Myotub-related1724442.40E-65
PF06602.15Myotub-related5186685.90E-52
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K18081MTMR1_2 Metabolic pathways map01100
Inositol phosphate metabolismmap00562
Phosphatidylinositol signaling systemmap04070

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf10.373
SRR3591706second leaf7.243
SRR3591707mature leaf8.891
SRR3591708Shoot apex6.199
SRR3591709Stem11.330
SRR3591710White floral bud11.926
SRR3591711White flower12.991
SRR3591712Green floral bud9.097
SRR3591713Yellow flower9.970
SRP173429 SRR8316895Juvenile bud stage 6.708
SRR8316896Juvenile bud stage 10.202
SRR8316897Juvenile bud stage 5.065
SRR8316894Third green stage 4.421
SRR8316900Third green stage 9.846
SRR8316901Third green stage 10.581
SRR8316898Complete white stage 6.236
SRR8316899Complete white stage 12.122
SRR8316903Complete white stage 9.322
SRR8316902Silver flowering stage5.579
SRR8316904Silver flowering stage8.112
SRR8316905Silver flowering stage3.851
SRR8316906Gold flowering stage 10.657
SRR8316907Gold flowering stage 9.883
SRR8316908Gold flowering stage 10.560
SRP132670SRR6706286Control11.791
SRR6706287Light intensity 50%12.670
SRR6706288Light intensity 20%12.593
CNP0000432CNS0095592Slightly white alabastrum(diploid) 16.262
CNS0095593Slightly white alabastrum(diploid) 25.791
CNS0095594Slightly white alabastrum(diploid) 35.453
CNS0095595Whole white alabastrum(diploid) 25.620
CNS0095596Whole white alabastrum(diploid) 37.580
CNS0095597Whole white alabastrum(diploid) 46.417
CNS0095598Silvery flower (diploied) 16.323
CNS0095599Silvery flower (diploied) 27.399
CNS0095600Silvery flower (diploied) 314.482
CNS0095601Golden flower (diploid) 16.417
CNS0095602Golden flower (diploid) 212.803
CNS0095603Golden flower (diploid) 312.339
CNS0095604Slightly white alabastrum(tetraploid) 17.469
CNS0095605Slightly white alabastrum(tetraploid) 26.193
CNS0095606Slightly white alabastrum(tetraploid) 310.495
CNS0095607Whole white alabastrum(tetraploid) 16.776
CNS0095608Whole white alabastrum(tetraploid) 24.949
CNS0095609Whole white alabastrum(tetraploid) 38.946
CNS0095610Silvery flower (tetraploid) 112.957
CNS0095611Silvery flower (tetraploid) 213.417
CNS0095612Silvery flower (tetraploid) 311.602
CNS0095613Golden flower (tetraploid) 17.224
CNS0095614Golden flower (tetraploid) 212.599
CNS0095615Golden flower (tetraploid) 313.746
CRA001975CRR073297Stem 112.155
CRR073298Stem 211.400
CRR073299Stem 37.742
CRR073300Leaf 113.589
CRR073301Leaf 210.296
CRR073302Leaf 37.539
CRR073303Juvenile bud 18.946
CRR073304Juvenile bud 26.732
CRR073305Juvenile bud 310.216
CRR073306Third green 16.987
CRR073307Third green 24.132
CRR073308Third green 36.244
CRR073309Second white 14.034
CRR073310Second white 24.006
CRR073311Second white 35.745
CRR073312Silver flowering 15.327
CRR073313Silver flowering 24.495
CRR073314Silver flowering 36.040
CRR073315Gold flowering 14.425
CRR073316Gold flowering 27.259
CRR073317Gold flowering 32.975
CRR073318Tawny withering 18.628
CRR073319Tawny withering 26.729
CRR073320Tawny withering 38.003