Gene detail

Detail information of GWHGAAZE005104

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002270953.1	1.4142E-117	PREDICTED: RING-H2 finger protein ATL8 [Vitis vinifera]
Swissprot	tr\|O64762\|ATL38_ARATH	6E-20	RING-H2 finger protein ATL38
trEMBL	tr\|A0A061FRE6\|A0A061FRE6_THECC	9E-118	RING/U-box superfamily protein isoform 1 {ECO:0000313\|EMBL:EOY19197.1}
TAIR10	AT2G34990.1	1E-17	RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	2763182	2766960	-
GWHAAZE00000002	mRNA	2763182	2766960	-
GWHAAZE00000002	exon	2763182	2763608	-
GWHAAZE00000002	exon	2765954	2766051	-
GWHAAZE00000002	exon	2766506	2766960	-
GWHAAZE00000002	five_prime_UTR	2766671	2766960	-
GWHAAZE00000002	CDS	2766506	2766670	-
GWHAAZE00000002	CDS	2765954	2766051	-
GWHAAZE00000002	CDS	2763182	2763608	-

Transcript Sequence
>GWHTAAZE005110 ACATTTTTACTTATTTATGTTGATACCTAGGGTTAGATTTTGTTAACAACAACAACAACTGCTACTACATAAACCAAGAATTCATATTTAGATTTCTAAGTGAGAGAGAGTTGGATATAGATAAGGAGGGATCGACACAAATGGTTACTTGTTGATGAGTAAAATTCTAGGTTTACATTGATTGGATGTAAACGGTTATGAAGAAGAGGAGTGTAATATGGGAACTGAAACCCAGGGTTTTGGAGTAGATCGTAAACATAGATGAAATTGAATTTTACAAAAAAAAGAAGATGATCAGTCCGGGTATAAATTTAGTGATGACAGTGATTGGATTCGCGGTGAGTACGATGTTCATAGTATTCGTGTGCACTAGGCTCATCTGTGCTCGTATTCAATTGAACGCATCCAGGCGCTCATTCCCTGTTGCTTCTAGATCTGATCTCAGTCTCGGCATTCTGGAGCGGGGTTTGCATGGCCTTGAGCCTCTTGTTGTAGCCAACTTTCCAACAAAGAAGTACAGTGATCCGTATTTTTCCTCTGCAGAAGATGCTCAGTGCACAGTCTGCCTTGCTGAGTATCACGCAGAAGATACACTACGTATATTGCCTTTCTGCGGACACGCCTTTCATGCAACCTGTATAGACATATGGCTGCAGCAGCACTCCACTTGTCCAGTTTGTCGAATCTCATTGCGAGAACCTGATAAGAAGCGGTTGATGCAGCCTGTGTTCAGCTCAGCCGTCCGTTCTCAGTACCCTATGAACTCCCTTGACACAAACTCTTATCAACGGTTACTGACTGTACATGGGCTTTCATCAAGAGCACATGGCAACCATCAGATGGAACCCATTGAGGAGGACCAGTTTCAGGCCGAGGGTAACAGAGCTGAAGCTGGGGAAAGCAACTCCATCTTGATTGAGGTTTCTCAGACCACAAAAGATTTGGAAAACAAACGTGTGGAGAGTCCATCAAATCCATAG

Network for GWHGAAZE005104

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13639.7	zf-RING_2	88	131	2.60E-13

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	13.208
	SRR3591706	second leaf	14.925
	SRR3591707	mature leaf	37.667
	SRR3591708	Shoot apex	17.478
	SRR3591709	Stem	18.594
	SRR3591710	White floral bud	7.290
	SRR3591711	White flower	8.026
	SRR3591712	Green floral bud	11.817
	SRR3591713	Yellow flower	4.844
SRP173429	SRR8316895	Juvenile bud stage	6.786
	SRR8316896	Juvenile bud stage	10.134
	SRR8316897	Juvenile bud stage	2.915
	SRR8316894	Third green stage	5.267
	SRR8316900	Third green stage	16.395
	SRR8316901	Third green stage	12.152
	SRR8316898	Complete white stage	5.191
	SRR8316899	Complete white stage	25.453
	SRR8316903	Complete white stage	4.939
	SRR8316902	Silver flowering stage	3.532
	SRR8316904	Silver flowering stage	3.882
	SRR8316905	Silver flowering stage	2.052
	SRR8316906	Gold flowering stage	13.436
	SRR8316907	Gold flowering stage	16.438
	SRR8316908	Gold flowering stage	12.580
SRP132670	SRR6706286	Control	13.022
	SRR6706287	Light intensity 50%	12.301
	SRR6706288	Light intensity 20%	12.348
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.061
	CNS0095593	Slightly white alabastrum(diploid) 2	12.322
	CNS0095594	Slightly white alabastrum(diploid) 3	14.394
	CNS0095595	Whole white alabastrum(diploid) 2	13.146
	CNS0095596	Whole white alabastrum(diploid) 3	13.814
	CNS0095597	Whole white alabastrum(diploid) 4	10.108
	CNS0095598	Silvery flower (diploied) 1	7.874
	CNS0095599	Silvery flower (diploied) 2	7.001
	CNS0095600	Silvery flower (diploied) 3	7.693
	CNS0095601	Golden flower (diploid) 1	9.677
	CNS0095602	Golden flower (diploid) 2	7.458
	CNS0095603	Golden flower (diploid) 3	7.756
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.074
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.962
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.340
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.470
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.104
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.806
	CNS0095610	Silvery flower (tetraploid) 1	6.513
	CNS0095611	Silvery flower (tetraploid) 2	9.688
	CNS0095612	Silvery flower (tetraploid) 3	3.998
	CNS0095613	Golden flower (tetraploid) 1	3.610
	CNS0095614	Golden flower (tetraploid) 2	7.794
	CNS0095615	Golden flower (tetraploid) 3	1.654
CRA001975	CRR073297	Stem 1	20.009
	CRR073298	Stem 2	18.298
	CRR073299	Stem 3	20.513
	CRR073300	Leaf 1	18.093
	CRR073301	Leaf 2	24.366
	CRR073302	Leaf 3	24.195
	CRR073303	Juvenile bud 1	26.730
	CRR073304	Juvenile bud 2	14.918
	CRR073305	Juvenile bud 3	22.587
	CRR073306	Third green 1	6.951
	CRR073307	Third green 2	5.256
	CRR073308	Third green 3	4.668
	CRR073309	Second white 1	9.131
	CRR073310	Second white 2	11.040
	CRR073311	Second white 3	6.130
	CRR073312	Silver flowering 1	2.970
	CRR073313	Silver flowering 2	1.911
	CRR073314	Silver flowering 3	3.954
	CRR073315	Gold flowering 1	46.508
	CRR073316	Gold flowering 2	49.856
	CRR073317	Gold flowering 3	46.293
	CRR073318	Tawny withering 1	15.177
	CRR073319	Tawny withering 2	12.748
	CRR073320	Tawny withering 3	12.722