Detail information of GWHGAAZE005133


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006367129.18.43444E-74PREDICTED: diphosphomevalonate decarboxylase-like [Solanum tuberosum]
trEMBLtr|M1AV78|M1AV78_SOLTU3E-74Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400031130}
TAIR10AT3G54250.14E-49GHMP kinase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene31423853144330-
GWHAAZE00000002mRNA31423853144330-
GWHAAZE00000002exon31423853142640-
GWHAAZE00000002exon31427913142915-
GWHAAZE00000002exon31429853143033-
GWHAAZE00000002exon31431583143230-
GWHAAZE00000002exon31435153143713-
GWHAAZE00000002exon31441153144330-
GWHAAZE00000002CDS31441153144330-
GWHAAZE00000002CDS31435153143713-
GWHAAZE00000002CDS31431583143230-
GWHAAZE00000002CDS31429853143033-
GWHAAZE00000002CDS31427913142915-
GWHAAZE00000002CDS31423853142640-
Transcript Sequence

Network for GWHGAAZE005133

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF18376.2MDD_C1342414.50E-29
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01597MVD, mvaD Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Terpenoid backbone biosynthesismap00900

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf2.316
SRR3591706second leaf0.644
SRR3591707mature leaf0.174
SRR3591708Shoot apex1.425
SRR3591709Stem1.947
SRR3591710White floral bud0.657
SRR3591711White flower0.763
SRR3591712Green floral bud1.953
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 0.991
SRR8316896Juvenile bud stage 0.513
SRR8316897Juvenile bud stage 0.298
SRR8316894Third green stage 0.604
SRR8316900Third green stage 2.369
SRR8316901Third green stage 1.287
SRR8316898Complete white stage 0.088
SRR8316899Complete white stage 3.499
SRR8316903Complete white stage 0.632
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.120
SRR8316905Silver flowering stage0.136
SRR8316906Gold flowering stage 0.080
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.026
SRP132670SRR6706286Control2.065
SRR6706287Light intensity 50%2.788
SRR6706288Light intensity 20%3.302
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.492
CNS0095593Slightly white alabastrum(diploid) 21.130
CNS0095594Slightly white alabastrum(diploid) 32.021
CNS0095595Whole white alabastrum(diploid) 21.357
CNS0095596Whole white alabastrum(diploid) 30.969
CNS0095597Whole white alabastrum(diploid) 41.355
CNS0095598Silvery flower (diploied) 10.418
CNS0095599Silvery flower (diploied) 20.000
CNS0095600Silvery flower (diploied) 30.630
CNS0095601Golden flower (diploid) 10.130
CNS0095602Golden flower (diploid) 20.228
CNS0095603Golden flower (diploid) 30.280
CNS0095604Slightly white alabastrum(tetraploid) 12.382
CNS0095605Slightly white alabastrum(tetraploid) 22.471
CNS0095606Slightly white alabastrum(tetraploid) 33.409
CNS0095607Whole white alabastrum(tetraploid) 11.554
CNS0095608Whole white alabastrum(tetraploid) 22.134
CNS0095609Whole white alabastrum(tetraploid) 32.140
CNS0095610Silvery flower (tetraploid) 10.954
CNS0095611Silvery flower (tetraploid) 20.881
CNS0095612Silvery flower (tetraploid) 30.209
CNS0095613Golden flower (tetraploid) 10.607
CNS0095614Golden flower (tetraploid) 20.348
CNS0095615Golden flower (tetraploid) 30.033
CRA001975CRR073297Stem 10.807
CRR073298Stem 21.436
CRR073299Stem 30.782
CRR073300Leaf 11.918
CRR073301Leaf 22.917
CRR073302Leaf 31.157
CRR073303Juvenile bud 11.144
CRR073304Juvenile bud 20.277
CRR073305Juvenile bud 31.090
CRR073306Third green 10.000
CRR073307Third green 20.000
CRR073308Third green 30.000
CRR073309Second white 10.000
CRR073310Second white 20.004
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.049
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.453
CRR073319Tawny withering 20.054
CRR073320Tawny withering 31.591