Gene detail

Detail information of GWHGAAZE005159

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006365673.1	0	PREDICTED: dnaJ protein homolog isoform X2 [Solanum tuberosum]
Swissprot	tr\|Q04960\|DNJH_CUCSA	0	DnaJ protein homolog (Precursor)
trEMBL	tr\|M0ZPC7\|M0ZPC7_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400005019}
TAIR10	AT3G44110.1	3E-144	DNAJ homologue 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	3597831	3600468	+
GWHAAZE00000002	mRNA	3597831	3600468	+
GWHAAZE00000002	exon	3597831	3597966	+
GWHAAZE00000002	exon	3598582	3598740	+
GWHAAZE00000002	exon	3598846	3598987	+
GWHAAZE00000002	exon	3599094	3599370	+
GWHAAZE00000002	exon	3599456	3599654	+
GWHAAZE00000002	exon	3599818	3600468	+
GWHAAZE00000002	CDS	3597831	3597966	+
GWHAAZE00000002	CDS	3598582	3598740	+
GWHAAZE00000002	CDS	3598846	3598987	+
GWHAAZE00000002	CDS	3599094	3599370	+
GWHAAZE00000002	CDS	3599456	3599654	+
GWHAAZE00000002	CDS	3599818	3600146	+
GWHAAZE00000002	three_prime_UTR	3600147	3600468	+

Transcript Sequence
>GWHTAAZE005165 ATGTTTGGGAGGGCGCCTAAGAAAAGCGACAATAGTAAGTACTATGAGATCTTAGGGGTTCCTAAGAACGCTTCGCAGGATGATCTCAAGAAGGCTTATCGTAAAGCTGCCATCAAGAACCATCCCGATAAAGGCGAGCTTGCCCAAGCTTATGAGGTTCTAAGCGATCCGGAGAAGCGTGAGGTTTATGATCAATATGGTGAAGATGCACTCAAGGAAGGAATGGGTCCTGGAGCTGGTGGGCATGATCCATTTGACATCTTCCAATCATTTTTCGGCGGTAACCCTTTTGGTGGTGGAAGCAGCAGCAGAGGCAGAAGGCAAAGAAGGGGGGATGATGTTATTCATCCTTTAAAGGTTTCACTGGAGGATCTCTACAATGGTACATCCAAGAAGCTTTCCCTCTCCCGTAATGTAATTTGCTCCAAGTGCAAGGGTAAAGGGTCCAAGTCAGGTGCTTCAATGAAATGTGCTGGGTGCCAAGGATCTGGAATGAAAGTTTCTATTAGACACCTGGGCCCATCTATGATCCAGCAGATGCAGCATCCTTGCAATGAATGCAAGGGAACTGGTGAAGCTATAAGTGACAAAGATCGATGCCCTCAGTGCAAGGGTGAGAAGGTTGTGCAGGAGAAAAAGGTGTTGGAAGTTGTCGTAGAGAAGGGTATGCAAAATGGACAGAGGATTACTTTCCCTGGGGAGGCTGATGAAGCACCGGAAACCGTCACAGGGGACATAGTCTTTGTTGTACAACAGAAAGAACACCCCAAGTTCAAGAGGAAGGGTGATGACCTATTCCTTGAACACACCTTGACCCTCACGGAAGCGCTTTGCGGCTTTCAGTTTATCTTGACTCATCTAGATAACAGGCAGCTCCTCATCAAATCCGAACCCGGAGAAGTTATTAAGCCTGATCAATTCAAGGGAATAAATGATGAGGGAATGCCAATGTACCAGAGGCCATTTATGAGAGGCAAGTTGTATATTCATTTCACAGTTGATTTCCCAGATTCCTTGAACAGTGAGCAGTGCAAGGGCCTGGAGCCTGTGCTGCCTCCTAGGCCTTCACAGGCGATTACAGATATGGAGCTGGATGAATGTGAGGAGACTACTCTTCACGATGTTAACATTGAGGAGGAGATGCGTAGGAAGCAGCATCAGCAGGCTCAAGAGGCATACGATGAAGATGATGATGATAATACGTATGGTGGCGCGCAGAGGGTGCAGTGTGCTCAGCAATGATTATAATATTTAGCCTCTTTTTAAAATTCGAAATTTGTGGGAGGTTGCCTTTTTGATCAGTGAGCTGATCGGCTGTCAGTTTCTCTAAGACAATAACATTGTCCTTAATATCGTCTTCTATGATAGTTTCTGGGATACAGTGGCTATAGGTTGCTAGTTTCTTGGATTGATATTTTCTCATTCGAACAAAACTGAAAATGTATTGAAGGGTTTAGTATTTGATTTGACCACGGAGAATTGTTTGACATTTTCGAATTTACGTCCTGCTTGGTGTGATTTTTTCAGATATAGTTAATATACGTGCTTTTATTACTCTCGCTCA

Network for GWHGAAZE005159

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00226.32	DnaJ	13	64	7.60E-17
PF01556.19	DnaJ_C	115	336	1.70E-40
PF00684.20	DnaJ_CXXCXGXG	141	207	4.30E-15

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K09503	DNAJA2	Protein processing in endoplasmic reticulum	map04141

Gene Ontology

GO term	Ontology	Name
GO:0006457	biological_process	protein folding
GO:0031072	molecular_function	heat shock protein binding
GO:0051082	molecular_function	unfolded protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	235.314
	SRR3591706	second leaf	100.391
	SRR3591707	mature leaf	134.081
	SRR3591708	Shoot apex	244.056
	SRR3591709	Stem	274.649
	SRR3591710	White floral bud	218.611
	SRR3591711	White flower	227.340
	SRR3591712	Green floral bud	233.754
	SRR3591713	Yellow flower	159.764
SRP173429	SRR8316895	Juvenile bud stage	137.918
	SRR8316896	Juvenile bud stage	192.974
	SRR8316897	Juvenile bud stage	87.049
	SRR8316894	Third green stage	85.286
	SRR8316900	Third green stage	238.909
	SRR8316901	Third green stage	239.809
	SRR8316898	Complete white stage	108.768
	SRR8316899	Complete white stage	368.991
	SRR8316903	Complete white stage	173.224
	SRR8316902	Silver flowering stage	96.813
	SRR8316904	Silver flowering stage	105.966
	SRR8316905	Silver flowering stage	55.968
	SRR8316906	Gold flowering stage	179.477
	SRR8316907	Gold flowering stage	184.649
	SRR8316908	Gold flowering stage	202.745
SRP132670	SRR6706286	Control	323.518
	SRR6706287	Light intensity 50%	322.195
	SRR6706288	Light intensity 20%	339.346
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	194.175
	CNS0095593	Slightly white alabastrum(diploid) 2	208.692
	CNS0095594	Slightly white alabastrum(diploid) 3	177.243
	CNS0095595	Whole white alabastrum(diploid) 2	178.229
	CNS0095596	Whole white alabastrum(diploid) 3	169.624
	CNS0095597	Whole white alabastrum(diploid) 4	159.514
	CNS0095598	Silvery flower (diploied) 1	201.266
	CNS0095599	Silvery flower (diploied) 2	167.876
	CNS0095600	Silvery flower (diploied) 3	231.887
	CNS0095601	Golden flower (diploid) 1	199.309
	CNS0095602	Golden flower (diploid) 2	236.974
	CNS0095603	Golden flower (diploid) 3	237.549
	CNS0095604	Slightly white alabastrum(tetraploid) 1	202.249
	CNS0095605	Slightly white alabastrum(tetraploid) 2	186.810
	CNS0095606	Slightly white alabastrum(tetraploid) 3	344.209
	CNS0095607	Whole white alabastrum(tetraploid) 1	141.418
	CNS0095608	Whole white alabastrum(tetraploid) 2	122.649
	CNS0095609	Whole white alabastrum(tetraploid) 3	250.622
	CNS0095610	Silvery flower (tetraploid) 1	209.356
	CNS0095611	Silvery flower (tetraploid) 2	203.220
	CNS0095612	Silvery flower (tetraploid) 3	156.016
	CNS0095613	Golden flower (tetraploid) 1	138.371
	CNS0095614	Golden flower (tetraploid) 2	177.628
	CNS0095615	Golden flower (tetraploid) 3	147.095
CRA001975	CRR073297	Stem 1	238.072
	CRR073298	Stem 2	233.651
	CRR073299	Stem 3	232.184
	CRR073300	Leaf 1	292.431
	CRR073301	Leaf 2	286.424
	CRR073302	Leaf 3	240.378
	CRR073303	Juvenile bud 1	258.028
	CRR073304	Juvenile bud 2	235.720
	CRR073305	Juvenile bud 3	319.916
	CRR073306	Third green 1	139.470
	CRR073307	Third green 2	125.408
	CRR073308	Third green 3	146.744
	CRR073309	Second white 1	95.312
	CRR073310	Second white 2	76.316
	CRR073311	Second white 3	66.562
	CRR073312	Silver flowering 1	55.385
	CRR073313	Silver flowering 2	59.170
	CRR073314	Silver flowering 3	53.331
	CRR073315	Gold flowering 1	116.692
	CRR073316	Gold flowering 2	118.136
	CRR073317	Gold flowering 3	143.712
	CRR073318	Tawny withering 1	228.781
	CRR073319	Tawny withering 2	197.882
	CRR073320	Tawny withering 3	197.370