Gene detail

Detail information of GWHGAAZE005171

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010932966.1	PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q9FPT1\|UBP12_ARATH	Ubiquitin carboxyl-terminal hydrolase 12
trEMBL	tr\|D7U8M2\|D7U8M2_VITVI	Ubiquitin carboxyl-terminal hydrolase {ECO:0000256\|RuleBase:RU004435}
TAIR10	AT5G06600.3	ubiquitin-specific protease 12

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	3769430	3788635	+
GWHAAZE00000002	mRNA	3769430	3788635	+
GWHAAZE00000002	exon	3769430	3769474	+
GWHAAZE00000002	exon	3771069	3771135	+
GWHAAZE00000002	exon	3771387	3771534	+
GWHAAZE00000002	exon	3771652	3771809	+
GWHAAZE00000002	exon	3773008	3773273	+
GWHAAZE00000002	exon	3773345	3773563	+
GWHAAZE00000002	exon	3773631	3773739	+
GWHAAZE00000002	exon	3773817	3773932	+
GWHAAZE00000002	exon	3774422	3774520	+
GWHAAZE00000002	exon	3777850	3777959	+
GWHAAZE00000002	exon	3778733	3778807	+
GWHAAZE00000002	exon	3779540	3779645	+
GWHAAZE00000002	exon	3779747	3779893	+
GWHAAZE00000002	exon	3780937	3781059	+
GWHAAZE00000002	exon	3783087	3783164	+
GWHAAZE00000002	exon	3783278	3783366	+
GWHAAZE00000002	exon	3783788	3783896	+
GWHAAZE00000002	exon	3784006	3784074	+
GWHAAZE00000002	exon	3784205	3784315	+
GWHAAZE00000002	exon	3784470	3784525	+
GWHAAZE00000002	exon	3784619	3784796	+
GWHAAZE00000002	exon	3784907	3785008	+
GWHAAZE00000002	exon	3785103	3785174	+
GWHAAZE00000002	exon	3785415	3785480	+
GWHAAZE00000002	exon	3786413	3786478	+
GWHAAZE00000002	exon	3787148	3787234	+
GWHAAZE00000002	exon	3787470	3787586	+
GWHAAZE00000002	exon	3787708	3787782	+
GWHAAZE00000002	exon	3787925	3788011	+
GWHAAZE00000002	exon	3788543	3788635	+
GWHAAZE00000002	CDS	3769430	3769474	+
GWHAAZE00000002	CDS	3771069	3771135	+
GWHAAZE00000002	CDS	3771387	3771534	+
GWHAAZE00000002	CDS	3771652	3771809	+
GWHAAZE00000002	CDS	3773008	3773273	+
GWHAAZE00000002	CDS	3773345	3773563	+
GWHAAZE00000002	CDS	3773631	3773739	+
GWHAAZE00000002	CDS	3773817	3773932	+
GWHAAZE00000002	CDS	3774422	3774520	+
GWHAAZE00000002	CDS	3777850	3777959	+
GWHAAZE00000002	CDS	3778733	3778807	+
GWHAAZE00000002	CDS	3779540	3779645	+
GWHAAZE00000002	CDS	3779747	3779893	+
GWHAAZE00000002	CDS	3780937	3781059	+
GWHAAZE00000002	CDS	3783087	3783164	+
GWHAAZE00000002	CDS	3783278	3783366	+
GWHAAZE00000002	CDS	3783788	3783896	+
GWHAAZE00000002	CDS	3784006	3784074	+
GWHAAZE00000002	CDS	3784205	3784315	+
GWHAAZE00000002	CDS	3784470	3784525	+
GWHAAZE00000002	CDS	3784619	3784796	+
GWHAAZE00000002	CDS	3784907	3785008	+
GWHAAZE00000002	CDS	3785103	3785174	+
GWHAAZE00000002	CDS	3785415	3785480	+
GWHAAZE00000002	CDS	3786413	3786478	+
GWHAAZE00000002	CDS	3787148	3787234	+
GWHAAZE00000002	CDS	3787470	3787586	+
GWHAAZE00000002	CDS	3787708	3787782	+
GWHAAZE00000002	CDS	3787925	3788011	+
GWHAAZE00000002	CDS	3788543	3788635	+

Transcript Sequence
>GWHTAAZE005177 ATGTCGATTGGTCATTTGGTTGAGGCAGTGTTTTGGCTACCAGAGTCAGAGGAGGATGAGATGCTTGTTCCGCATTCGGATTTCGCCGCAGAAGGTCCTCAACCTATGGAAGTTGCACCAGCAGAAACTGTTAATGCAGCAGATGCTCAGTCAGTTGATGATCCCCCTTTGGCACGGTTCACATGGACAATTGAGAACTTTTCAAGGTTGAACACTAAGAAGCTCTATTCAGAAGTTTTTTACGTCGGAGGATACAAATGGCGGGTACTTATATTCCCAAAGGGGAACAACGTGGATCATTTGTCAATGTACCTGGATGTTGCCGATTCCTCAACTCTGCCTTATGGGTGGAGTAGATATGCCCAATTCAGCTTAGCCGTCGTCAATCAAATTCATAACAAGTTCACAGTAAGGAAAGACACGCAACACCAGTTCAATGCACGAGAAAGTGATTGGGGTTTCACTTCGTTCATGCCACTTGGTGAACTATATGATCCCGGTAGAGGTTATCTTGCGAATGATACATGCATAGTTGAAGCTGAAGTTGCCGTCCGGAGGGTTGTTGATTACTGGTCACATGACTCAAAAAAGGAGACAGGTTATGTTGGACTTAAGAATCAAGGAGCTACTTGTTATATGAATTCTCTCCTTCAGACACTTTACCATATTCCATATTTCAGAAAGGCCGTGTATCATATGCCAACAACCGAGAATGATATGCCATCAGGGAGCATTCCCCTTGCCCTGCAGAGTTTATTCTATAAGCTTCAGTATAGTGACACTAGTGTAGCTACGAAAGAGTTGACCAAGTCATTTGGATGGGACACATATGATTCTTTCATGCAGCACGATGTTCAAGAACTCAATAGGGTTCTTTGTGAAAAGCTTGAAGATAAAATGAAGGGAACTGTTGTGGAGGGTACCATACAGCAGTTATTTGAAGGGCACCATATGAACTATATTGAATGCATCAATGTAGACTACAAGTCGACCAGAAAGGAATCATATTATGATCTTCAGCTTGATGTCAAAGGTTGTCGGGATATTTATGCTTCGTTTGACAAGTATGTGGAAGTGGAACGTCTTGAGGGTGACAATAGATACCACGCTGAACACTATGGTTTGCAGGATGCGAGGAAGGGTGTCCTGTTTATTGACTTTCCCCCTGTTCTCCAACTTCAGTTGAAACGATTTGAGTATGATTTTATGCGCGACACCATGGTTAAGATAAATGACCGGTATGAGTTCCCTTTGCAACTTGATCTTGATAGGGAGAATGGCAGATATTTATCACCTGAGGCAGATAGGAATGTTCGCAACTTGTACACTCTTCACAGTGTTTTGGTACATAGTGGTGGAGTGCATGGTGGACATTATTATGCTTATATCCGGCCAACCCTCTCCGATAAATGTTCAACATTGACTGTTGCTGCTTTTAGGTTCAAGTTCGATGATGAACGCGTTACAAAAGAAGATATGAAGAGGGCGTTGGAGGAGCAATATGGTGGTGAGGAAGAGTTACCACAGACAAACCCTGGGTTCAACAACTCTCCGTTCAAATTTACAAAATATTCAAATGCATATATGCTTGTGTATATACGTGAAAGTGACAAGGATAAAATAATTTGTAACGTTGATGAAAAGGACATAGCAGAACATTTAAGGGAGGAAGTTGCTAAAGAGTTGGGCATACCAGTGCAATTTCAACGCTTTTGGCTATGGGCAAAGCGGCAAAACCACACGTATCGTCCAAATCGGCCCTTGACACCTCAGGAGGAAGCTCAATCTGTTGGGCAATTGAGGGAAGTATCCAATAAAGCCAACAATGCGGAGTTAAAGTTGTTTTTGGAAGTAGAAGTTGGGGTGAATCTGCAGCCCATTCCACCTCCTGAAAAGACCAAAGAGGATATTCTTCTCTTCTTCAAACTTTATGACCCTTTGAAAGAGGAGCTCCGATATGTTGGGAGGCTGTTTGTCAAAGGCAGTGGCAAGCCAGTGGAAATACTTGCAAAGCTGAATGAATTGGCTGGCTTTGCTCCCGATGAAGAAATTGAACTCTTTGAGGAAATAAAATATGAACCTAATGTCATGTGCGAACACGTTGATAAGAAGCTTACTTTCCGGGGTAGTCAGCTTGAAGATGGGGACATCATTTGCTTTCAAAAACCCCTTCAAGTTGAACGTAGTGAACAGGGCCGCTATGGAGATGTTCCTTCTTTTCTGGAATATGTGCGTAACCGTCAGGTTGTTCACCTTCGTTCGCTAGAGAAACCCAAGGAGGATGAGTTCTGTCTTGAGTTGTCAAAGCTTCACAGTTACGATGATGTCGTCAAAAGAGTAGCGCGCCATCTTAATTTGGATGATCCGTCAAAAATCAGACTTACATCTCATAATTGCTATTCCCAGCAGCCTAAACCCCAACCAATCAAGTACCGAGGAGTGGAACATCTTTCTGGCATGTTGGTTCACTACAATCAGACTTCCGATATTCTGTATTATGAGGTATTGGATATTCCTCTGCCAGAACTCCAAGGCCTGAAGACCCTTAAAGTTGCTTTTCATCATGCTACTAAGGATGAAGTGGCCATCCATACTATTAGACTGCCAAAGCAAAGCACTGTTGGGGATGTTATTAATGACCTTAAGACAAAGGTTGAGTTGTCTCATCCAAGTGCAGAACTTAGACTGCTTGAGGTTTTCTATCACAAAATCTACAAGATTTTCCCACTTAATGAAAAGATCGAGAACATTAATGATCAATATTGGACGTTACGTGCAGAGGAGATTCCAGAAGAGGAGAAAACCCTTGGTCCTCATGATCGCTTGATTCACGTTTATCATTTTACGAAAGACACTTCTCAGAACCAAGTGCAAATCCAGAATTTTGGGGAACCCTTTTTCCTGGTCATCCATGAGGGCGAGACATTGGCTGATGTTAAAGCACGCATTCAAAAGAAATTGCAGGTTCCAGATGAGGAGTTTTTTAAGTGGAAATTTGCATTTTTGTCTTTGGGTCGCCCCGAGTACCTTCAGGACCTGGACATAGTGTCCACTCGTTTTCAGAGAAGAGATGTTTATGGTGCTTGGGAGCAGTACCTTGGTTTAGAGCACCCTGACAATGCTCCCAAAAGGTCATATGCAGCCCATCAGGGTGGCGATCATATGCAGCGTGTCCTACCTCCATATTCTGGACCAACCTCTTTCTCTCAACTCTTCAAGCACCCAGCAGCGGGGTTCAGGTAG

Network for GWHGAAZE005171

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00917.27	MATH	64	184	1.70E-19
PF00443.30	UCH	202	532	2.20E-42
PF12436.9	USP7_ICP0_bdg	569	821	2.10E-75
PF14533.7	USP7_C2	831	1041	1.40E-56

Protein Sequence

>GWHPAAZE005174
MSIGHLVEAVFWLPESEEDEMLVPHSDFAAEGPQPMEVAPAETVNAADAQSVDDPPLARFTWTIENFSRLNTKKLYSEVFYVGGYKWRVLIFPKGNNVDHLSMYLDVADSSTLPYGWSRYAQFSLAVVNQIHNKFTVRKDTQHQFNARESDWGFTSFMPLGELYDPGRGYLANDTCIVEAEVAVRRVVDYWSHDSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDMPSGSIPLALQSLFYKLQYSDTSVATKELTKSFGWDTYDSFMQHDVQELNRVLCEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESYYDLQLDVKGCRDIYASFDKYVEVERLEGDNRYHAEHYGLQDARKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQLDLDRENGRYLSPEADRNVRNLYTLHSVLVHSGGVHGGHYYAYIRPTLSDKCSTLTVAAFRFKFDDERVTKEDMKRALEEQYGGEEELPQTNPGFNNSPFKFTKYSNAYMLVYIRESDKDKIICNVDEKDIAEHLREEVAKELGIPVQFQRFWLWAKRQNHTYRPNRPLTPQEEAQSVGQLREVSNKANNAELKLFLEVEVGVNLQPIPPPEKTKEDILLFFKLYDPLKEELRYVGRLFVKGSGKPVEILAKLNELAGFAPDEEIELFEEIKYEPNVMCEHVDKKLTFRGSQLEDGDIICFQKPLQVERSEQGRYGDVPSFLEYVRNRQVVHLRSLEKPKEDEFCLELSKLHSYDDVVKRVARHLNLDDPSKIRLTSHNCYSQQPKPQPIKYRGVEHLSGMLVHYNQTSDILYYEVLDIPLPELQGLKTLKVAFHHATKDEVAIHTIRLPKQSTVGDVINDLKTKVELSHPSAELRLLEVFYHKIYKIFPLNEKIENINDQYWTLRAEEIPEEEKTLGPHDRLIHVYHFTKDTSQNQVQIQNFGEPFFLVIHEGETLADVKARIQKKLQVPDEEFFKWKFAFLSLGRPEYLQDLDIVSTRFQRRDVYGAWEQYLGLEHPDNAPKRSYAAHQGGDHMQRVLPPYSGPTSFSQLFKHPAAGFR

Gene family

Gene family	subfamily
Ubiquitin Family	USP

KEGG pathway

KO	Enzyme	pathway	mapID
K11838	USP7, UBP15	FoxO signaling pathway	map04068

Gene Ontology

GO term	Ontology	Name
GO:0006511	biological_process	ubiquitin-dependent protein catabolic process
GO:0016579	biological_process	protein deubiquitination
GO:0005515	molecular_function	protein binding
GO:0036459	molecular_function	thiol-dependent ubiquitinyl hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	34.031
	SRR3591706	second leaf	22.394
	SRR3591707	mature leaf	19.579
	SRR3591708	Shoot apex	21.934
	SRR3591709	Stem	22.985
	SRR3591710	White floral bud	15.549
	SRR3591711	White flower	11.878
	SRR3591712	Green floral bud	24.542
	SRR3591713	Yellow flower	4.886
SRP173429	SRR8316895	Juvenile bud stage	16.442
	SRR8316896	Juvenile bud stage	20.500
	SRR8316897	Juvenile bud stage	10.112
	SRR8316894	Third green stage	9.296
	SRR8316900	Third green stage	21.619
	SRR8316901	Third green stage	19.245
	SRR8316898	Complete white stage	4.045
	SRR8316899	Complete white stage	17.812
	SRR8316903	Complete white stage	10.015
	SRR8316902	Silver flowering stage	3.600
	SRR8316904	Silver flowering stage	6.295
	SRR8316905	Silver flowering stage	2.066
	SRR8316906	Gold flowering stage	6.104
	SRR8316907	Gold flowering stage	5.557
	SRR8316908	Gold flowering stage	5.235
SRP132670	SRR6706286	Control	13.237
	SRR6706287	Light intensity 50%	15.060
	SRR6706288	Light intensity 20%	15.638
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	16.249
	CNS0095593	Slightly white alabastrum(diploid) 2	14.563
	CNS0095594	Slightly white alabastrum(diploid) 3	14.252
	CNS0095595	Whole white alabastrum(diploid) 2	12.688
	CNS0095596	Whole white alabastrum(diploid) 3	11.402
	CNS0095597	Whole white alabastrum(diploid) 4	10.178
	CNS0095598	Silvery flower (diploied) 1	9.631
	CNS0095599	Silvery flower (diploied) 2	7.894
	CNS0095600	Silvery flower (diploied) 3	9.016
	CNS0095601	Golden flower (diploid) 1	6.988
	CNS0095602	Golden flower (diploid) 2	7.535
	CNS0095603	Golden flower (diploid) 3	7.903
	CNS0095604	Slightly white alabastrum(tetraploid) 1	19.470
	CNS0095605	Slightly white alabastrum(tetraploid) 2	17.021
	CNS0095606	Slightly white alabastrum(tetraploid) 3	27.522
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.943
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.929
	CNS0095609	Whole white alabastrum(tetraploid) 3	21.577
	CNS0095610	Silvery flower (tetraploid) 1	11.241
	CNS0095611	Silvery flower (tetraploid) 2	10.398
	CNS0095612	Silvery flower (tetraploid) 3	6.747
	CNS0095613	Golden flower (tetraploid) 1	3.514
	CNS0095614	Golden flower (tetraploid) 2	6.998
	CNS0095615	Golden flower (tetraploid) 3	2.357
CRA001975	CRR073297	Stem 1	19.487
	CRR073298	Stem 2	16.851
	CRR073299	Stem 3	10.097
	CRR073300	Leaf 1	18.316
	CRR073301	Leaf 2	15.284
	CRR073302	Leaf 3	10.407
	CRR073303	Juvenile bud 1	9.516
	CRR073304	Juvenile bud 2	5.716
	CRR073305	Juvenile bud 3	13.262
	CRR073306	Third green 1	1.856
	CRR073307	Third green 2	1.630
	CRR073308	Third green 3	2.568
	CRR073309	Second white 1	0.428
	CRR073310	Second white 2	0.854
	CRR073311	Second white 3	0.428
	CRR073312	Silver flowering 1	0.464
	CRR073313	Silver flowering 2	0.673
	CRR073314	Silver flowering 3	0.298
	CRR073315	Gold flowering 1	3.281
	CRR073316	Gold flowering 2	8.416
	CRR073317	Gold flowering 3	1.729
	CRR073318	Tawny withering 1	9.092
	CRR073319	Tawny withering 2	8.917
	CRR073320	Tawny withering 3	9.585