Detail information of GWHGAAZE005176


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrABZ89177.16.983E-102putative protein [Coffea canephora]
trEMBLtr|F1DGB2|F1DGB2_COFAR4E-109Sequence-specific DNA-binding transcription factor {ECO:0000313|EMBL:ADY38784.1}
TAIR10AT4G12750.13E-57Homeodomain-like transcriptional regulator

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene38828823885411-
GWHAAZE00000002mRNA38828823885411-
GWHAAZE00000002exon38852273885411-
GWHAAZE00000002exon38850713885127-
GWHAAZE00000002exon38847763884988-
GWHAAZE00000002exon38845053884605-
GWHAAZE00000002exon38843003884386-
GWHAAZE00000002exon38840213884152-
GWHAAZE00000002exon38837573883945-
GWHAAZE00000002exon38832793883401-
GWHAAZE00000002exon38828823883145-
GWHAAZE00000002five_prime_UTR38852273885411-
GWHAAZE00000002five_prime_UTR38850713885127-
GWHAAZE00000002five_prime_UTR38848913884988-
GWHAAZE00000002CDS38847763884890-
GWHAAZE00000002CDS38845053884605-
GWHAAZE00000002CDS38843003884386-
GWHAAZE00000002CDS38840213884152-
GWHAAZE00000002CDS38837573883945-
GWHAAZE00000002CDS38832793883401-
GWHAAZE00000002CDS38828823883145-
Transcript Sequence

Network for GWHGAAZE005176

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02791.18DDT661208.00E-09
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyDDT

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

Created with Highcharts 5.0.4Chart context menuExpression pattern for GWHGAAZE005176.youngest leafsecond leafmature leafShoot apexStemWhite floral budWhite flowerGreen floral budYellow flowerJuvenile bud stage 1Juvenile bud stage 2Juvenile bud stage 3Third green stage 1Third green stage 2Third green stage 3Complete white stage 1Complete white stage 2Complete white stage 3Silver flowering stage 1Silver flowering stage 2Silver flowering stage 3Gold flowering stage 1Gold flowering stage 2Gold flowering stage 3Control 1Light intensity 50%Light intensity 20%Slightly white alabastrum(diploid) 1Slightly white alabastrum(diploid) 2Slightly white alabastrum(diploid) 3Whole white alabastrum(diploid) 1Whole white alabastrum(diploid) 2Whole white alabastrum(diploid) 3Silvery flower (diploied) 1Silvery flower (diploied) 2Silvery flower (diploied) 3Golden flower (diploid) 1Golden flower (diploid) 2Golden flower (diploid) 3Slightly white alabastrum(tetraploid) 1Slightly white alabastrum(tetraploid) 2Slightly white alabastrum(tetraploid) 3Whole white alabastrum(tetraploid) 1Whole white alabastrum(tetraploid) 2Whole white alabastrum(tetraploid) 3Silvery flower (tetraploid) 1Silvery flower (tetraploid) 2Silvery flower (tetraploid) 3Golden flower (tetraploid) 1Golden flower (tetraploid) 2Golden flower (tetraploid) 3Stem 1Stem 2Stem 3Leaf 1Leaf 2Leaf 3Juvenile bud 1Juvenile bud 2Juvenile bud 3Third green 1Third green 2Third green 3Second white 1Second white 2Second white 3Silver flowering 1Silver flowering 2Silver flowering 3Gold flowering 1Gold flowering 2Gold flowering 3Tawny withering 1Tawny withering 2Tawny withering 300.511.522.533.544.55Highcharts.com

Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf2.710
SRR3591706second leaf1.745
SRR3591707mature leaf2.517
SRR3591708Shoot apex2.399
SRR3591709Stem3.549
SRR3591710White floral bud2.159
SRR3591711White flower2.541
SRR3591712Green floral bud2.372
SRR3591713Yellow flower1.547
SRP173429 SRR8316895Juvenile bud stage 2.094
SRR8316896Juvenile bud stage 3.533
SRR8316897Juvenile bud stage 1.297
SRR8316894Third green stage 2.338
SRR8316900Third green stage 3.271
SRR8316901Third green stage 4.349
SRR8316898Complete white stage 0.499
SRR8316899Complete white stage 4.227
SRR8316903Complete white stage 1.249
SRR8316902Silver flowering stage0.522
SRR8316904Silver flowering stage1.164
SRR8316905Silver flowering stage0.459
SRR8316906Gold flowering stage 1.028
SRR8316907Gold flowering stage 0.671
SRR8316908Gold flowering stage 0.938
SRP132670SRR6706286Control1.055
SRR6706287Light intensity 50%1.181
SRR6706288Light intensity 20%1.235
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.312
CNS0095593Slightly white alabastrum(diploid) 21.590
CNS0095594Slightly white alabastrum(diploid) 30.854
CNS0095595Whole white alabastrum(diploid) 21.143
CNS0095596Whole white alabastrum(diploid) 31.498
CNS0095597Whole white alabastrum(diploid) 41.003
CNS0095598Silvery flower (diploied) 11.954
CNS0095599Silvery flower (diploied) 21.648
CNS0095600Silvery flower (diploied) 31.146
CNS0095601Golden flower (diploid) 11.664
CNS0095602Golden flower (diploid) 21.469
CNS0095603Golden flower (diploid) 31.387
CNS0095604Slightly white alabastrum(tetraploid) 12.935
CNS0095605Slightly white alabastrum(tetraploid) 21.375
CNS0095606Slightly white alabastrum(tetraploid) 33.675
CNS0095607Whole white alabastrum(tetraploid) 11.568
CNS0095608Whole white alabastrum(tetraploid) 21.655
CNS0095609Whole white alabastrum(tetraploid) 32.580
CNS0095610Silvery flower (tetraploid) 13.044
CNS0095611Silvery flower (tetraploid) 23.677
CNS0095612Silvery flower (tetraploid) 31.527
CNS0095613Golden flower (tetraploid) 10.495
CNS0095614Golden flower (tetraploid) 22.563
CNS0095615Golden flower (tetraploid) 30.621
CRA001975CRR073297Stem 11.631
CRR073298Stem 21.586
CRR073299Stem 30.280
CRR073300Leaf 11.665
CRR073301Leaf 21.477
CRR073302Leaf 30.295
CRR073303Juvenile bud 10.071
CRR073304Juvenile bud 20.195
CRR073305Juvenile bud 30.171
CRR073306Third green 10.000
CRR073307Third green 20.000
CRR073308Third green 30.031
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.003
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.561
CRR073316Gold flowering 20.702
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.574
CRR073319Tawny withering 21.664
CRR073320Tawny withering 30.267