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Detail information of GWHGAAZE005176
Functional Annotation
Database
Orthologs
E value
Annotation
Nr
ABZ89177.1
6.983E-102
putative protein [Coffea canephora]
trEMBL
tr|F1DGB2|F1DGB2_COFAR
4E-109
Sequence-specific DNA-binding transcription factor {ECO:0000313|EMBL:ADY38784.1}
TAIR10
AT4G12750.1
3E-57
Homeodomain-like transcriptional regulator
Location And Transcript Sequence
(JBrowse)
Scaffold
Type
Start
End
Strand
GWHAAZE00000002
gene
3882882
3885411
-
GWHAAZE00000002
mRNA
3882882
3885411
-
GWHAAZE00000002
exon
3885227
3885411
-
GWHAAZE00000002
exon
3885071
3885127
-
GWHAAZE00000002
exon
3884776
3884988
-
GWHAAZE00000002
exon
3884505
3884605
-
GWHAAZE00000002
exon
3884300
3884386
-
GWHAAZE00000002
exon
3884021
3884152
-
GWHAAZE00000002
exon
3883757
3883945
-
GWHAAZE00000002
exon
3883279
3883401
-
GWHAAZE00000002
exon
3882882
3883145
-
GWHAAZE00000002
five_prime_UTR
3885227
3885411
-
GWHAAZE00000002
five_prime_UTR
3885071
3885127
-
GWHAAZE00000002
five_prime_UTR
3884891
3884988
-
GWHAAZE00000002
CDS
3884776
3884890
-
GWHAAZE00000002
CDS
3884505
3884605
-
GWHAAZE00000002
CDS
3884300
3884386
-
GWHAAZE00000002
CDS
3884021
3884152
-
GWHAAZE00000002
CDS
3883757
3883945
-
GWHAAZE00000002
CDS
3883279
3883401
-
GWHAAZE00000002
CDS
3882882
3883145
-
Transcript Sequence
>GWHTAAZE005182 GAAGTGCACCAGTGAAAAAACATGGCATTGGAAAAGGTTTGATGACAGTTTGGCGGGTAACAAATCTGGACGCTGTAGATTACCCTATAGATTTTGCCAAGAAGGCTGCTTTTCATATATCAGCTCCTATATCACAAAAACCACACTTTCAAGAGAAAAAGAAAATGCCGCGCCGACAACAACCTAGAAGATTAGGAAACAAATTGAAAGATAAGAAGCATCCTTCTGTTAGAAATAGAAAGGAATGCCTAAAATTCGAGAAGCCGAAATGGCCATGAAAAGAAAAATGTGAACTTGCTCTGGAAGACAGACATGCCTAGAAAACCCAGATCCATATATCATGCTAGTGGATGATGAAGAACTGGAGCTAAGAGAATTACAAGCAGGACCGAATCCGTTAACACGCTCTGCTCATTTTGCTACCGATAGATTGCATGGGTGTTCGCTCTGCAAAGATTTGCTGGGTAAGTTTCCTCCAAATTCTGTTGCAATGAAGCAACCATTGTATATGCAACTGTTGGATTCTTCTCCAGAACTTGTGAAGAAAATGTTTAAGGTCTTTCATTTTCTTTATACTTATGCTGTAACGATTAATATATGTCCCTTCACCTTTGATGAGTTTACTCAAGCATTCCACGATAAGGATTCATTGTTACTCGGGGAAATTAACGTGGCTATCCTCAAGCTTCTTCTGGCTGATATTGAAATGGAGCTTAGTAGTGAATTTTCATCTCGTTTGAGCAAAAATTGCAAGTTTCTTGGATTACTTCAATCTGGAAAAAATGTTGAGAGTCCTAGCTTTCATGCTTTGGCAGGTCAAATGTCAATAATTTGCTTTGAAGTTTTGGAAGAGATCACTGAATTCCCTGACATGGACAGAGATATTGCGTCAAGTGTTTATTGCAGCTGGTTTTGGTTATCAACATTTCAACACACTACTTCATGTAGGGAAGCTCTGAGCAAGGATTTGAACCTTATATCAAGGTATGGCTTAAGTCCTGGTACTTTAAAGGGTGAATTATTTACTATTTTATCATCACAAGGGAATAGGGGGATGAAAGTTACTGAATTGGCAAAGACTTCATATATTGTTGAATTGAATCTTGTGTCCACAACCGACGAACTAGAACTCTTGATAAGATCAATGCTTTCAAGTGACATTACCTTATTTGAAAAGATTTCATCATCTGCATATCGTCTACGCATTAATTATGTTGCCAAGGAATCTGACAATAATGAATCAGATTCCGAAGGCTTTGGAAGTGTTGATGACGACTCTAAGGAGAGCAGCAGATACAACATTGCCAGTGATTCTGAATGTGATTCAGTTCCTTCAAGTCCAACTAATTGA
Network for GWHGAAZE005176
Network category
Network
Top300 PCC genelist
Coexpression Positive
Network
Top300 PCC genelist
Coexpression Negative
Network
Top300 PCC genelist
Functional Module
Module ID
Function Annotation
Protein Structure
Pfam accession
Pfam name
Alignment start
Alignment end
E-value
PF02791.18
DDT
66
120
8.00E-09
Protein Sequence
>GWHPAAZE005179 MLVDDEELELRELQAGPNPLTRSAHFATDRLHGCSLCKDLLGKFPPNSVAMKQPLYMQLLDSSPELVKKMFKVFHFLYTYAVTINICPFTFDEFTQAFHDKDSLLLGEINVAILKLLLADIEMELSSEFSSRLSKNCKFLGLLQSGKNVESPSFHALAGQMSIICFEVLEEITEFPDMDRDIASSVYCSWFWLSTFQHTTSCREALSKDLNLISRYGLSPGTLKGELFTILSSQGNRGMKVTELAKTSYIVELNLVSTTDELELLIRSMLSSDITLFEKISSSAYRLRINYVAKESDNNESDSEGFGSVDDDSKESSRYNIASDSECDSVPSSPTN
Gene family
Gene family
subfamily
Transcription Factors Family
DDT
KEGG pathway
KO
Enzyme
pathway
mapID
--
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--
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Gene Ontology
GO term
Ontology
Name
Expression pattern
Expression pattern detail
SRP
Sample
Description
TPM
SRP075780
SRR3591705
youngest leaf
2.710
SRR3591706
second leaf
1.745
SRR3591707
mature leaf
2.517
SRR3591708
Shoot apex
2.399
SRR3591709
Stem
3.549
SRR3591710
White floral bud
2.159
SRR3591711
White flower
2.541
SRR3591712
Green floral bud
2.372
SRR3591713
Yellow flower
1.547
SRP173429
SRR8316895
Juvenile bud stage
2.094
SRR8316896
Juvenile bud stage
3.533
SRR8316897
Juvenile bud stage
1.297
SRR8316894
Third green stage
2.338
SRR8316900
Third green stage
3.271
SRR8316901
Third green stage
4.349
SRR8316898
Complete white stage
0.499
SRR8316899
Complete white stage
4.227
SRR8316903
Complete white stage
1.249
SRR8316902
Silver flowering stage
0.522
SRR8316904
Silver flowering stage
1.164
SRR8316905
Silver flowering stage
0.459
SRR8316906
Gold flowering stage
1.028
SRR8316907
Gold flowering stage
0.671
SRR8316908
Gold flowering stage
0.938
SRP132670
SRR6706286
Control
1.055
SRR6706287
Light intensity 50%
1.181
SRR6706288
Light intensity 20%
1.235
CNP0000432
CNS0095592
Slightly white alabastrum(diploid) 1
1.312
CNS0095593
Slightly white alabastrum(diploid) 2
1.590
CNS0095594
Slightly white alabastrum(diploid) 3
0.854
CNS0095595
Whole white alabastrum(diploid) 2
1.143
CNS0095596
Whole white alabastrum(diploid) 3
1.498
CNS0095597
Whole white alabastrum(diploid) 4
1.003
CNS0095598
Silvery flower (diploied) 1
1.954
CNS0095599
Silvery flower (diploied) 2
1.648
CNS0095600
Silvery flower (diploied) 3
1.146
CNS0095601
Golden flower (diploid) 1
1.664
CNS0095602
Golden flower (diploid) 2
1.469
CNS0095603
Golden flower (diploid) 3
1.387
CNS0095604
Slightly white alabastrum(tetraploid) 1
2.935
CNS0095605
Slightly white alabastrum(tetraploid) 2
1.375
CNS0095606
Slightly white alabastrum(tetraploid) 3
3.675
CNS0095607
Whole white alabastrum(tetraploid) 1
1.568
CNS0095608
Whole white alabastrum(tetraploid) 2
1.655
CNS0095609
Whole white alabastrum(tetraploid) 3
2.580
CNS0095610
Silvery flower (tetraploid) 1
3.044
CNS0095611
Silvery flower (tetraploid) 2
3.677
CNS0095612
Silvery flower (tetraploid) 3
1.527
CNS0095613
Golden flower (tetraploid) 1
0.495
CNS0095614
Golden flower (tetraploid) 2
2.563
CNS0095615
Golden flower (tetraploid) 3
0.621
CRA001975
CRR073297
Stem 1
1.631
CRR073298
Stem 2
1.586
CRR073299
Stem 3
0.280
CRR073300
Leaf 1
1.665
CRR073301
Leaf 2
1.477
CRR073302
Leaf 3
0.295
CRR073303
Juvenile bud 1
0.071
CRR073304
Juvenile bud 2
0.195
CRR073305
Juvenile bud 3
0.171
CRR073306
Third green 1
0.000
CRR073307
Third green 2
0.000
CRR073308
Third green 3
0.031
CRR073309
Second white 1
0.000
CRR073310
Second white 2
0.000
CRR073311
Second white 3
0.000
CRR073312
Silver flowering 1
0.003
CRR073313
Silver flowering 2
0.000
CRR073314
Silver flowering 3
0.000
CRR073315
Gold flowering 1
0.561
CRR073316
Gold flowering 2
0.702
CRR073317
Gold flowering 3
0.000
CRR073318
Tawny withering 1
0.574
CRR073319
Tawny withering 2
1.664
CRR073320
Tawny withering 3
0.267