Gene detail

Detail information of GWHGAAZE005192

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDO99983.1	7.80691E-76	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q7XBH4\|MYB4_ORYSJ	7E-68	Myb-related protein Myb4
trEMBL	tr\|A0A068TX92\|A0A068TX92_COFCA	3E-76	Coffea canephora DH200=94 genomic scaffold, scaffold_4 {ECO:0000313\|EMBL:CDO99983.1}
TAIR10	AT3G23250.1	3E-54	myb domain protein 15

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	4117968	4120380	+
GWHAAZE00000002	mRNA	4117968	4120380	+
GWHAAZE00000002	exon	4117968	4118160	+
GWHAAZE00000002	exon	4118455	4118584	+
GWHAAZE00000002	exon	4118798	4119265	+
GWHAAZE00000002	exon	4119909	4120017	+
GWHAAZE00000002	exon	4120204	4120380	+
GWHAAZE00000002	CDS	4117968	4118160	+
GWHAAZE00000002	CDS	4118455	4118584	+
GWHAAZE00000002	CDS	4118798	4119265	+
GWHAAZE00000002	CDS	4119909	4120017	+
GWHAAZE00000002	CDS	4120204	4120380	+

Transcript Sequence
>GWHTAAZE005198 TTGAACCCTTCAGTCTTTAGAGAGAGAGAGAAGATCTAGTTTAGAGAGAGAAAGAGAGAGATGGTGAGGACGCCTTGCTGTGAGAAGATGGGAACGAAGAAGGGGCCATGGACTCCCGAGGAAGATGAGATATTGGTTTCTCACATCCGCCGCTACGGCTATGATAATTGGCGTGCACTTCCAAAGCAAGCTGGTTTACTAAGGTGTGGAAAGAGTTGCAGACTGCGGTGGACAAATTATTTGCGTCCAGATATCAAAAGAGGGAATTTTTCCCTTGAAGAAGAAGAAACCATCACCAAGCTACATCAAGTCCTTGGAAACAGATGGTCTGCCATTGCCACGAGATTGCCAGGACGAACAGACAATGAAATAAAGAATTTTTGGAACACGCACTTAAAGAAGAAAGTACATTATCAAAAAATGCCCAACCAAAGAATGATCCCTATGGAAACAACCGATTGGGAAACCAAGCAGTTGAAAAAATTAGAGGCAGCTGATGATCACCATAAGTACTATTCAAGCCATCAAGCAGTTGAAAGTGTAGGCAATGCAAATATATCGGCAAAAGAATTTTCTGATTCAATCTCCAGGTCACACTCTTCTGCCTTAACAGCAACGTTAACGCAATCAACTCACATGATCAATGCCTCGAGAAATATTCCTGAAACGTATGAATTAAAAAGTTGTTCCACCACCACCAGTACTACAAGCAAATTTAAGGGTATTCAACAGTACAAGGTTGAGCCCATGGATGGTGACATTTTGAGTGTGAATGATGATGTTGTCTTTTGCACTGCTCCACAGTCTCCGCCGAGCACCGACCAAGTGACCACCTCTCCGGCTCTCCGTCCAGGCAACTCACTCAGCCTCAGGCAACTGGCGACTCAGCCACTCACTCAGCACTGCTTCATAGCCTCCACCGAGCACCGACCAGGCGACCATCTCTCCGGCTCTCCGTCCAGGCGACTCACTCATCCTCAGGCAACCGGCGACTCACCACTCACTCGTGGTTTCTTCCATATTTCTTGTCTTCTTGATGAATCAAACTTAGGTTTGAACTTTGAAACTTTTGTTTAG

Network for GWHGAAZE005192

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	33	80	2.70E-14
PF00249.32	Myb_DNA-binding	86	131	4.10E-14

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.087
	SRR3591706	second leaf	0.276
	SRR3591707	mature leaf	0.260
	SRR3591708	Shoot apex	0.271
	SRR3591709	Stem	0.357
	SRR3591710	White floral bud	0.143
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.173
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.017
	SRR8316896	Juvenile bud stage	0.007
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.129
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.009
	SRR8316899	Complete white stage	0.076
	SRR8316903	Complete white stage	0.048
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.008
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.003
	SRR8316907	Gold flowering stage	0.011
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.019
	SRR6706287	Light intensity 50%	0.045
	SRR6706288	Light intensity 20%	0.013
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.089
	CNS0095594	Slightly white alabastrum(diploid) 3	0.272
	CNS0095595	Whole white alabastrum(diploid) 2	0.012
	CNS0095596	Whole white alabastrum(diploid) 3	0.007
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.012
	CNS0095599	Silvery flower (diploied) 2	0.024
	CNS0095600	Silvery flower (diploied) 3	0.057
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.012
	CNS0095603	Golden flower (diploid) 3	0.021
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.010
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.065
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.077
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.010
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.110
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.005
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.180
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.068
	CRR073301	Leaf 2	0.061
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.011
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.096
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.504
	CRR073319	Tawny withering 2	0.050
	CRR073320	Tawny withering 3	0.069