Detail information of GWHGAAZE005206


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKDP34559.10hypothetical protein JCGZ_11109 [Jatropha curcas]
Swissprottr|Q93WX6|NFS2_ARATH0Cysteine desulfurase 2, chloroplastic (Precursor)
trEMBLtr|A0A067KRV2|A0A067KRV2_JATCU0Uncharacterized protein {ECO:0000313|EMBL:KDP34559.1}
TAIR10AT1G08490.10chloroplastic NIFS-like cysteine desulfurase

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene43003414305130-
GWHAAZE00000002mRNA43003414305130-
GWHAAZE00000002exon43050954305130-
GWHAAZE00000002exon43044984304631-
GWHAAZE00000002exon43039484304107-
GWHAAZE00000002exon43035754303761-
GWHAAZE00000002exon43020484302193-
GWHAAZE00000002exon43018954301967-
GWHAAZE00000002exon43015144301556-
GWHAAZE00000002exon43011294301228-
GWHAAZE00000002exon43007034300858-
GWHAAZE00000002exon43003414300511-
GWHAAZE00000002CDS43050954305130-
GWHAAZE00000002CDS43044984304631-
GWHAAZE00000002CDS43039484304107-
GWHAAZE00000002CDS43035754303761-
GWHAAZE00000002CDS43020484302193-
GWHAAZE00000002CDS43018954301967-
GWHAAZE00000002CDS43015144301556-
GWHAAZE00000002CDS43011294301228-
GWHAAZE00000002CDS43007034300858-
GWHAAZE00000002CDS43003414300511-
Transcript Sequence

Network for GWHGAAZE005206

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00266.20Aminotran_5203862.10E-137
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K11717sufS Metabolic pathways map01100
Selenocompound metabolismmap00450

Gene Ontology

GO term OntologyName
GO:0006534biological_processcysteine metabolic process
GO:0030170molecular_functionpyridoxal phosphate binding
GO:0031071molecular_functioncysteine desulfurase activity
GO:0003824molecular_functioncatalytic activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf23.487
SRR3591706second leaf55.776
SRR3591707mature leaf30.302
SRR3591708Shoot apex46.089
SRR3591709Stem19.300
SRR3591710White floral bud27.727
SRR3591711White flower42.509
SRR3591712Green floral bud28.308
SRR3591713Yellow flower66.402
SRP173429 SRR8316895Juvenile bud stage 18.982
SRR8316896Juvenile bud stage 27.741
SRR8316897Juvenile bud stage 15.141
SRR8316894Third green stage 11.581
SRR8316900Third green stage 39.902
SRR8316901Third green stage 38.146
SRR8316898Complete white stage 17.909
SRR8316899Complete white stage 44.516
SRR8316903Complete white stage 24.139
SRR8316902Silver flowering stage17.019
SRR8316904Silver flowering stage21.449
SRR8316905Silver flowering stage9.575
SRR8316906Gold flowering stage 38.158
SRR8316907Gold flowering stage 38.180
SRR8316908Gold flowering stage 45.854
SRP132670SRR6706286Control26.169
SRR6706287Light intensity 50%28.768
SRR6706288Light intensity 20%33.420
CNP0000432CNS0095592Slightly white alabastrum(diploid) 115.569
CNS0095593Slightly white alabastrum(diploid) 214.735
CNS0095594Slightly white alabastrum(diploid) 314.529
CNS0095595Whole white alabastrum(diploid) 219.327
CNS0095596Whole white alabastrum(diploid) 311.557
CNS0095597Whole white alabastrum(diploid) 414.066
CNS0095598Silvery flower (diploied) 121.684
CNS0095599Silvery flower (diploied) 224.526
CNS0095600Silvery flower (diploied) 339.363
CNS0095601Golden flower (diploid) 120.955
CNS0095602Golden flower (diploid) 236.423
CNS0095603Golden flower (diploid) 332.649
CNS0095604Slightly white alabastrum(tetraploid) 118.053
CNS0095605Slightly white alabastrum(tetraploid) 217.081
CNS0095606Slightly white alabastrum(tetraploid) 331.839
CNS0095607Whole white alabastrum(tetraploid) 18.886
CNS0095608Whole white alabastrum(tetraploid) 29.191
CNS0095609Whole white alabastrum(tetraploid) 327.126
CNS0095610Silvery flower (tetraploid) 139.164
CNS0095611Silvery flower (tetraploid) 238.247
CNS0095612Silvery flower (tetraploid) 340.926
CNS0095613Golden flower (tetraploid) 132.331
CNS0095614Golden flower (tetraploid) 235.466
CNS0095615Golden flower (tetraploid) 340.400
CRA001975CRR073297Stem 127.438
CRR073298Stem 226.335
CRR073299Stem 324.433
CRR073300Leaf 128.856
CRR073301Leaf 226.717
CRR073302Leaf 325.749
CRR073303Juvenile bud 131.788
CRR073304Juvenile bud 232.034
CRR073305Juvenile bud 321.353
CRR073306Third green 117.366
CRR073307Third green 28.568
CRR073308Third green 314.782
CRR073309Second white 121.551
CRR073310Second white 223.664
CRR073311Second white 326.498
CRR073312Silver flowering 130.918
CRR073313Silver flowering 223.991
CRR073314Silver flowering 329.927
CRR073315Gold flowering 129.113
CRR073316Gold flowering 244.996
CRR073317Gold flowering 322.828
CRR073318Tawny withering 114.195
CRR073319Tawny withering 214.273
CRR073320Tawny withering 318.318