Detail information of GWHGAAZE005217


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002264983.10PREDICTED: peroxisome biogenesis protein 12 [Vitis vinifera]
Swissprottr|Q9M841|PEX12_ARATH0Peroxisome biogenesis protein 12
trEMBLtr|E0CU83|E0CU83_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI22341.3}
TAIR10AT3G04460.11E-167peroxin-12

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene44529144458031-
GWHAAZE00000002mRNA44529144458031-
GWHAAZE00000002exon44579244458031-
GWHAAZE00000002exon44575934457770-
GWHAAZE00000002exon44572994457498-
GWHAAZE00000002exon44558724456121-
GWHAAZE00000002exon44553634455472-
GWHAAZE00000002exon44550384455112-
GWHAAZE00000002exon44543594454445-
GWHAAZE00000002exon44540534454157-
GWHAAZE00000002exon44534184453546-
GWHAAZE00000002exon44529144453227-
GWHAAZE00000002CDS44579244458031-
GWHAAZE00000002CDS44575934457770-
GWHAAZE00000002CDS44572994457498-
GWHAAZE00000002CDS44558724456121-
GWHAAZE00000002CDS44553634455472-
GWHAAZE00000002CDS44550384455112-
GWHAAZE00000002CDS44543594454445-
GWHAAZE00000002CDS44540534454157-
GWHAAZE00000002CDS44534184453546-
GWHAAZE00000002CDS44531564453227-
GWHAAZE00000002three_prime_UTR44529144453155-
Transcript Sequence

Network for GWHGAAZE005217

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04757.15Pex2_Pex1220762.50E-07
PF04757.15Pex2_Pex12973449.60E-36
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
K13345PEX12, PAF3 Peroxisome map04146

Gene Ontology

GO term OntologyName
GO:0006625biological_processprotein targeting to peroxisome
GO:0005779cellular_componentintegral component of peroxisomal membrane
GO:0008022molecular_functionprotein C-terminus binding
GO:0008270molecular_functionzinc ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf11.261
SRR3591706second leaf11.761
SRR3591707mature leaf10.128
SRR3591708Shoot apex19.018
SRR3591709Stem10.542
SRR3591710White floral bud11.898
SRR3591711White flower17.500
SRR3591712Green floral bud12.005
SRR3591713Yellow flower15.322
SRP173429 SRR8316895Juvenile bud stage 11.172
SRR8316896Juvenile bud stage 14.113
SRR8316897Juvenile bud stage 7.115
SRR8316894Third green stage 5.775
SRR8316900Third green stage 15.265
SRR8316901Third green stage 13.158
SRR8316898Complete white stage 5.888
SRR8316899Complete white stage 17.445
SRR8316903Complete white stage 7.910
SRR8316902Silver flowering stage9.235
SRR8316904Silver flowering stage9.777
SRR8316905Silver flowering stage5.299
SRR8316906Gold flowering stage 21.672
SRR8316907Gold flowering stage 20.549
SRR8316908Gold flowering stage 17.191
SRP132670SRR6706286Control15.611
SRR6706287Light intensity 50%15.916
SRR6706288Light intensity 20%15.016
CNP0000432CNS0095592Slightly white alabastrum(diploid) 112.619
CNS0095593Slightly white alabastrum(diploid) 215.056
CNS0095594Slightly white alabastrum(diploid) 315.973
CNS0095595Whole white alabastrum(diploid) 210.400
CNS0095596Whole white alabastrum(diploid) 39.044
CNS0095597Whole white alabastrum(diploid) 412.393
CNS0095598Silvery flower (diploied) 121.130
CNS0095599Silvery flower (diploied) 213.905
CNS0095600Silvery flower (diploied) 317.570
CNS0095601Golden flower (diploid) 119.547
CNS0095602Golden flower (diploid) 216.545
CNS0095603Golden flower (diploid) 315.622
CNS0095604Slightly white alabastrum(tetraploid) 113.392
CNS0095605Slightly white alabastrum(tetraploid) 214.074
CNS0095606Slightly white alabastrum(tetraploid) 319.319
CNS0095607Whole white alabastrum(tetraploid) 112.850
CNS0095608Whole white alabastrum(tetraploid) 28.390
CNS0095609Whole white alabastrum(tetraploid) 313.320
CNS0095610Silvery flower (tetraploid) 121.599
CNS0095611Silvery flower (tetraploid) 217.237
CNS0095612Silvery flower (tetraploid) 313.343
CNS0095613Golden flower (tetraploid) 115.465
CNS0095614Golden flower (tetraploid) 216.784
CNS0095615Golden flower (tetraploid) 314.289
CRA001975CRR073297Stem 115.405
CRR073298Stem 215.492
CRR073299Stem 312.980
CRR073300Leaf 113.348
CRR073301Leaf 214.196
CRR073302Leaf 38.562
CRR073303Juvenile bud 17.785
CRR073304Juvenile bud 28.530
CRR073305Juvenile bud 310.790
CRR073306Third green 13.079
CRR073307Third green 23.333
CRR073308Third green 35.837
CRR073309Second white 15.881
CRR073310Second white 26.742
CRR073311Second white 34.994
CRR073312Silver flowering 14.465
CRR073313Silver flowering 24.873
CRR073314Silver flowering 35.389
CRR073315Gold flowering 17.992
CRR073316Gold flowering 27.662
CRR073317Gold flowering 37.233
CRR073318Tawny withering 111.195
CRR073319Tawny withering 29.766
CRR073320Tawny withering 37.949