Detail information of GWHGAAZE005225


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010264859.10PREDICTED: protein CHROMATIN REMODELING 20 isoform X1 [Nelumbo nucifera]
Swissprottr|F4HW51|CHR20_ARATH0Protein CHROMATIN REMODELING 20 {ECO:0000303|PubMed:16547115}
trEMBLtr|A0A068U6W9|A0A068U6W9_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_12 {ECO:0000313|EMBL:CDP04275.1}
TAIR10AT1G08600.40P-loop containing nucleoside triphosphate hydrolases superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene45386804559572-
GWHAAZE00000002mRNA45386804559572-
GWHAAZE00000002exon45595254559572-
GWHAAZE00000002exon45582854558398-
GWHAAZE00000002exon45573324557415-
GWHAAZE00000002exon45549134555458-
GWHAAZE00000002exon45540424554420-
GWHAAZE00000002exon45533264553462-
GWHAAZE00000002exon45528624553077-
GWHAAZE00000002exon45512024551300-
GWHAAZE00000002exon45481854548304-
GWHAAZE00000002exon45472544547420-
GWHAAZE00000002exon45461504546291-
GWHAAZE00000002exon45452024545446-
GWHAAZE00000002exon45446634544963-
GWHAAZE00000002exon45436704543769-
GWHAAZE00000002exon45426204542681-
GWHAAZE00000002exon45419114542131-
GWHAAZE00000002exon45402594540462-
GWHAAZE00000002exon45400964540174-
GWHAAZE00000002exon45397444540015-
GWHAAZE00000002exon45386804539103-
GWHAAZE00000002CDS45595254559572-
GWHAAZE00000002CDS45582854558398-
GWHAAZE00000002CDS45573324557415-
GWHAAZE00000002CDS45549134555458-
GWHAAZE00000002CDS45540424554420-
GWHAAZE00000002CDS45533264553462-
GWHAAZE00000002CDS45528624553077-
GWHAAZE00000002CDS45512024551300-
GWHAAZE00000002CDS45481854548304-
GWHAAZE00000002CDS45472544547420-
GWHAAZE00000002CDS45461504546291-
GWHAAZE00000002CDS45452024545446-
GWHAAZE00000002CDS45446634544963-
GWHAAZE00000002CDS45436704543769-
GWHAAZE00000002CDS45426204542681-
GWHAAZE00000002CDS45419114542131-
GWHAAZE00000002CDS45402594540462-
GWHAAZE00000002CDS45400964540174-
GWHAAZE00000002CDS45397444540015-
GWHAAZE00000002CDS45386804539103-
Transcript Sequence

Network for GWHGAAZE005225

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00176.24SNF2_N5588423.30E-39
PF00271.32Helicase_C94310641.50E-14
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilySNF2

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf16.679
SRR3591706second leaf11.522
SRR3591707mature leaf13.514
SRR3591708Shoot apex16.737
SRR3591709Stem17.941
SRR3591710White floral bud17.075
SRR3591711White flower19.264
SRR3591712Green floral bud17.395
SRR3591713Yellow flower14.917
SRP173429 SRR8316895Juvenile bud stage 9.226
SRR8316896Juvenile bud stage 13.085
SRR8316897Juvenile bud stage 5.303
SRR8316894Third green stage 6.227
SRR8316900Third green stage 13.466
SRR8316901Third green stage 12.469
SRR8316898Complete white stage 4.454
SRR8316899Complete white stage 14.633
SRR8316903Complete white stage 10.488
SRR8316902Silver flowering stage6.822
SRR8316904Silver flowering stage11.803
SRR8316905Silver flowering stage4.803
SRR8316906Gold flowering stage 14.778
SRR8316907Gold flowering stage 13.326
SRR8316908Gold flowering stage 13.871
SRP132670SRR6706286Control5.673
SRR6706287Light intensity 50%6.348
SRR6706288Light intensity 20%6.908
CNP0000432CNS0095592Slightly white alabastrum(diploid) 17.155
CNS0095593Slightly white alabastrum(diploid) 27.177
CNS0095594Slightly white alabastrum(diploid) 37.178
CNS0095595Whole white alabastrum(diploid) 28.692
CNS0095596Whole white alabastrum(diploid) 38.608
CNS0095597Whole white alabastrum(diploid) 49.122
CNS0095598Silvery flower (diploied) 112.020
CNS0095599Silvery flower (diploied) 27.880
CNS0095600Silvery flower (diploied) 317.349
CNS0095601Golden flower (diploid) 17.802
CNS0095602Golden flower (diploid) 217.725
CNS0095603Golden flower (diploid) 316.188
CNS0095604Slightly white alabastrum(tetraploid) 19.608
CNS0095605Slightly white alabastrum(tetraploid) 28.152
CNS0095606Slightly white alabastrum(tetraploid) 313.578
CNS0095607Whole white alabastrum(tetraploid) 16.818
CNS0095608Whole white alabastrum(tetraploid) 26.911
CNS0095609Whole white alabastrum(tetraploid) 311.416
CNS0095610Silvery flower (tetraploid) 115.669
CNS0095611Silvery flower (tetraploid) 215.646
CNS0095612Silvery flower (tetraploid) 316.368
CNS0095613Golden flower (tetraploid) 17.165
CNS0095614Golden flower (tetraploid) 213.218
CNS0095615Golden flower (tetraploid) 316.192
CRA001975CRR073297Stem 112.456
CRR073298Stem 211.703
CRR073299Stem 38.146
CRR073300Leaf 112.076
CRR073301Leaf 210.227
CRR073302Leaf 36.167
CRR073303Juvenile bud 17.284
CRR073304Juvenile bud 24.604
CRR073305Juvenile bud 39.209
CRR073306Third green 12.908
CRR073307Third green 22.590
CRR073308Third green 34.397
CRR073309Second white 13.183
CRR073310Second white 25.657
CRR073311Second white 35.246
CRR073312Silver flowering 14.967
CRR073313Silver flowering 24.409
CRR073314Silver flowering 33.627
CRR073315Gold flowering 15.749
CRR073316Gold flowering 29.704
CRR073317Gold flowering 33.793
CRR073318Tawny withering 17.753
CRR073319Tawny withering 28.661
CRR073320Tawny withering 38.034