Gene detail

Detail information of GWHGAAZE005228

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002325782.2	clavata1 receptor kinase family protein [Populus trichocarpa]
Swissprot	tr\|Q9FRS6\|PXL1_ARATH	Leucine-rich repeat receptor-like protein kinase PXL1 (Precursor)
trEMBL	tr\|B9IPC5\|B9IPC5_POPTR	Clavata1 receptor kinase family protein {ECO:0000313\|EMBL:EEF00164.2}
TAIR10	AT1G08590.1	Leucine-rich receptor-like protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	4593938	4598890	-
GWHAAZE00000002	mRNA	4593938	4598890	-
GWHAAZE00000002	exon	4596208	4598890	-
GWHAAZE00000002	exon	4593938	4594359	-
GWHAAZE00000002	CDS	4596208	4598890	-
GWHAAZE00000002	CDS	4593938	4594359	-

Transcript Sequence
>GWHTAAZE005234 ATGAAGAAAAAAATGCAGACCCATCTGCTTTTTTTCTTCTTCTCCTTCTACATTGGTCCCTCTCTTGTTTTTGGTCAGGGAGTTCTATCAACTGTATCCAGTGACGAACTATCAACCTTATTGTTGATTAAAACCAGTCTCATTGATCCTTTGGATCATCTCGGCAATTGGAAAGTCGCGGGCAGCGGGGTCGATATTAATGCTACTTCACCATCTCCTTGCAATTGGACCGGCGTTTGGTGCAACTCACAAGGCTATGTGATCAAGCTTGACATCTCTAACATGAATCTCAGTGGCATTTTCTCTCAACACATTCAAAACTTGAACAATCTCTCATTTCTCAACATATCCTGTAATGGGTTCTCAACTTCCCTGCCCAAATCATTCTCAAATCTCACTTCACTCAAGAGCATTGATGTAAGCCAGAACGACTTTGTTGGGGCCTTCCCATGGGGCCTTGGAATGGCTTCAGCCTTGACAATAATCAACGCATCTAGCAACAATTTTGCGGGTTTCCTCCCAGAGGATCTTGGAAACGCAACCTCACTTGAAATCTTGGATTTTCGAGGGAGTTTCTTTGAAGGGTCAATTCCTTCATCTTTCAAGAATTTGCAAAAGTTGAAGTTTCTTGGGCTTTCCGGGAATAATCTCACCGGGAAAATTCCACCAGAGATCGGCCAACTCTCGTCTCTAGAGACTATCATTCTCGGATACAATGAATTTGAAGGTCCAATCCCTGCAGAATTTGGCAATCTTACCAATCTCCATTATCTAGATTTGGCTGTGGGCAGTTTAAGTGGTGCTATTCCAGCCGAATTGGGTAAGTTGAAGCAACTTACCACAATTTACTTGTATCAAAACAACTTTGAAGGGATGATTCCACCTGGAATCGGAAACATTGCATCCTTGGTGTATTTGGATCTCTCAGACAACCGAATAACGGGGGAGATTCCAGAGGAGATAGCGGAATTGAAGAACTTGCAGCTATTGAACCTCATGTGCAATCAACTGAGTGGTACTATTCCAAACAAGCTAGGTGAGTTAACTAATCTTGTAGTGCTTGAGCTATGGAAAAACTCTCTTACAGGTCCTTTGCCTGTAAATCTTGGAATGAACTCTCCGGTTCAATGGCTCGACGTATCTTCAAATTCTTTATCAGGTGAAATTCCTGGTGGGTTATGTGATTATGGCAATCTCACTAAACTCATCCTCTTCAACAATTCCTTCTCGGGTTCAATCCCAATAGGCCTCTCAAATTGTTCTTCATTAATCCGGGTTAGAGTCCAAAACAATCTTCTTTCTGGTACAATTCCAGTTGGGTTTGGCAATTTACTTGAGCTCCAACGGTTAGAATTGGCAAACAATAATCTCACTGGTGAAATTCCAGGAGATATTGCTCTTTCTTCATCACTTTCTTTCATCGACGTAGCAAGAAACAGCCTTCAATCATCTCTACCTTCTACCATTTTCTCCATTCCAAATTTGCAAAACTTCATGGCTTCCAATAATAACTTGGAAGGCCAAATCCCAGACCAATTTCAAGATTCCCCTTCTCTCTCTGTGCTCGATCTTTCAAGCAATCATTTCTCTGGTGAGATCCCAGAGAGCATAGCGTCGTGTGAAAAACTGGTGAATTTGAATCTCAGAAACAACCACTTAACCGGAGAAATTCCAAAGCCAATAACTACAATGTTCTCATTATCCATTCTTGATTTATCGAACAACTCTCTGGTGGGACGAATACCCGACACCCTCGGAACCTCACCAGCACTGGAAATGCTAAACTTGTCTTACAACAAGCTCGAAGGTCCAGTTCCCCATAACGGAATGTTCTCAACCATTAACCGCAATGATCTGATAGGCAACCCTGGACTTTGCGGTGGCATACTTCCATCTTGTTCACGCATTTCAACAAACACCTCGAGGGCAAGAAAAGTTCACATAAATCACATTGTTGTTGGATTTGTCATCGGAATATCGGCAATTCTAGCTCTAGGATTACTGGCATTTACAACAAGATGGTTATACAAAAGATGGTTTTTGTGTAGCGGGTTCTTCAAAGACTGCTTCACGAAGAAGAATTCGCAATGGCCATGGAGACTCGTAGCATTCCAAAGACTAAATTTCAGCAGTACTGACATACTAAATTCAATCAAAGAATCAAATATTATTGGTATGGGAGGTACTGGAATTGTCTACAAAGCCGAAACTTACCGGCCACATTCAATCGTGGCCGTTAAAAAGCTATGGAGAAGACCAGAAATAGACACAGAAAACAGAGGAGATCAAGAAGAATTATTTGCGGAGGTGAATCTGGTGGGGAGATTGAGGCACAGGAATATAGTGAGGCTATTAGGGTATCTTCACAATGAGAATGATGTGATGATGATTTATGAGTATATGGCTAATGGGAATCTGGGTGAGGCATTACATGGAAAAGAGAAGGTGTTGTTGGTGGATTGGGTAACGAGGTATAATGTTGCGGTGGGTGTGGCTCAGGGTTTGGCTTACCTTCACCATGATTGCCGGCCGGCGGTGATTCACCGGGATGTCAAGGCAAACAATATTTTACTGGACTCCAACTTTGAGGCCAGGATTGCTGATTTTGGGTTGGCCAGGACTATGGTCAGGAAAGATGAGACTGTTTCAATGGTGGCCGGGTCCTATGGATATATTGCACCCGAATATGGCTATACATTGAAGGTTGATGAAAAAAGCGATATATATAGCTTTGGTGTGGTACTTCTAGAACTTGTAACTGGAAAAATGCCTCTCGACTCAACATTTGGAGAATCTATTGACATTGTGGAATGGGTTCGGAGAAAGATAAACAACAAAGTTGTAGGTGTAGGAGAAGCATTAGACTTGGATATAGCTGGTGAATGTAAACACGTCCAAGAAGAGATGCTTCTTGTCCTTAGAATTGCACTTCTTTGCACTGCGAAGCTCCCTAAAGATAGGCCATCAATGAGAGATATTATAACAATGCTTGGAGAGGCCAAGCCACGAAGAAAAAGCATTTGTCAAAATTGGGGGTCACTTGGTGCTAACAAGGATAAGCCAATCTTCAGCAACTCACCGATTATAGGCCTTTTATATCAATAA

Network for GWHGAAZE005228

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	34	82	1.70E-07
PF13855.7	LRR_8	89	145	1.10E-06
PF00560.34	LRR_1	182	204	1.9
PF13855.7	LRR_8	278	337	1.00E-06
PF13855.7	LRR_8	493	553	1.90E-07
PF00069.26	Pkinase	720	994	3.40E-47

Protein Sequence

>GWHPAAZE005231
MKKKMQTHLLFFFFSFYIGPSLVFGQGVLSTVSSDELSTLLLIKTSLIDPLDHLGNWKVAGSGVDINATSPSPCNWTGVWCNSQGYVIKLDISNMNLSGIFSQHIQNLNNLSFLNISCNGFSTSLPKSFSNLTSLKSIDVSQNDFVGAFPWGLGMASALTIINASSNNFAGFLPEDLGNATSLEILDFRGSFFEGSIPSSFKNLQKLKFLGLSGNNLTGKIPPEIGQLSSLETIILGYNEFEGPIPAEFGNLTNLHYLDLAVGSLSGAIPAELGKLKQLTTIYLYQNNFEGMIPPGIGNIASLVYLDLSDNRITGEIPEEIAELKNLQLLNLMCNQLSGTIPNKLGELTNLVVLELWKNSLTGPLPVNLGMNSPVQWLDVSSNSLSGEIPGGLCDYGNLTKLILFNNSFSGSIPIGLSNCSSLIRVRVQNNLLSGTIPVGFGNLLELQRLELANNNLTGEIPGDIALSSSLSFIDVARNSLQSSLPSTIFSIPNLQNFMASNNNLEGQIPDQFQDSPSLSVLDLSSNHFSGEIPESIASCEKLVNLNLRNNHLTGEIPKPITTMFSLSILDLSNNSLVGRIPDTLGTSPALEMLNLSYNKLEGPVPHNGMFSTINRNDLIGNPGLCGGILPSCSRISTNTSRARKVHINHIVVGFVIGISAILALGLLAFTTRWLYKRWFLCSGFFKDCFTKKNSQWPWRLVAFQRLNFSSTDILNSIKESNIIGMGGTGIVYKAETYRPHSIVAVKKLWRRPEIDTENRGDQEELFAEVNLVGRLRHRNIVRLLGYLHNENDVMMIYEYMANGNLGEALHGKEKVLLVDWVTRYNVAVGVAQGLAYLHHDCRPAVIHRDVKANNILLDSNFEARIADFGLARTMVRKDETVSMVAGSYGYIAPEYGYTLKVDEKSDIYSFGVVLLELVTGKMPLDSTFGESIDIVEWVRRKINNKVVGVGEALDLDIAGECKHVQEEMLLVLRIALLCTAKLPKDRPSMRDIITMLGEAKPRRKSICQNWGSLGANKDKPIFSNSPIIGLLYQ

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XI-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	19.392
	SRR3591706	second leaf	1.409
	SRR3591707	mature leaf	0.835
	SRR3591708	Shoot apex	5.129
	SRR3591709	Stem	0.975
	SRR3591710	White floral bud	1.607
	SRR3591711	White flower	0.702
	SRR3591712	Green floral bud	8.178
	SRR3591713	Yellow flower	0.225
SRP173429	SRR8316895	Juvenile bud stage	3.506
	SRR8316896	Juvenile bud stage	4.045
	SRR8316897	Juvenile bud stage	2.287
	SRR8316894	Third green stage	2.396
	SRR8316900	Third green stage	12.451
	SRR8316901	Third green stage	9.754
	SRR8316898	Complete white stage	1.029
	SRR8316899	Complete white stage	6.629
	SRR8316903	Complete white stage	2.224
	SRR8316902	Silver flowering stage	0.200
	SRR8316904	Silver flowering stage	0.627
	SRR8316905	Silver flowering stage	0.140
	SRR8316906	Gold flowering stage	0.391
	SRR8316907	Gold flowering stage	0.074
	SRR8316908	Gold flowering stage	0.382
SRP132670	SRR6706286	Control	5.644
	SRR6706287	Light intensity 50%	5.964
	SRR6706288	Light intensity 20%	7.916
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.714
	CNS0095593	Slightly white alabastrum(diploid) 2	6.560
	CNS0095594	Slightly white alabastrum(diploid) 3	3.302
	CNS0095595	Whole white alabastrum(diploid) 2	6.519
	CNS0095596	Whole white alabastrum(diploid) 3	7.733
	CNS0095597	Whole white alabastrum(diploid) 4	6.394
	CNS0095598	Silvery flower (diploied) 1	1.046
	CNS0095599	Silvery flower (diploied) 2	0.451
	CNS0095600	Silvery flower (diploied) 3	0.543
	CNS0095601	Golden flower (diploid) 1	0.605
	CNS0095602	Golden flower (diploid) 2	0.799
	CNS0095603	Golden flower (diploid) 3	0.904
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.841
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.613
	CNS0095606	Slightly white alabastrum(tetraploid) 3	14.818
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.154
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.314
	CNS0095609	Whole white alabastrum(tetraploid) 3	14.505
	CNS0095610	Silvery flower (tetraploid) 1	1.969
	CNS0095611	Silvery flower (tetraploid) 2	1.331
	CNS0095612	Silvery flower (tetraploid) 3	1.111
	CNS0095613	Golden flower (tetraploid) 1	0.484
	CNS0095614	Golden flower (tetraploid) 2	0.999
	CNS0095615	Golden flower (tetraploid) 3	0.318
CRA001975	CRR073297	Stem 1	6.633
	CRR073298	Stem 2	6.029
	CRR073299	Stem 3	5.875
	CRR073300	Leaf 1	11.461
	CRR073301	Leaf 2	8.787
	CRR073302	Leaf 3	8.036
	CRR073303	Juvenile bud 1	8.611
	CRR073304	Juvenile bud 2	8.153
	CRR073305	Juvenile bud 3	7.924
	CRR073306	Third green 1	1.365
	CRR073307	Third green 2	1.508
	CRR073308	Third green 3	1.213
	CRR073309	Second white 1	0.137
	CRR073310	Second white 2	0.435
	CRR073311	Second white 3	0.069
	CRR073312	Silver flowering 1	0.031
	CRR073313	Silver flowering 2	0.292
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	2.000
	CRR073316	Gold flowering 2	2.065
	CRR073317	Gold flowering 3	3.004
	CRR073318	Tawny withering 1	1.770
	CRR073319	Tawny withering 2	1.216
	CRR073320	Tawny withering 3	1.026