Gene detail

Detail information of GWHGAAZE005259

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006491827.1	1.5429E-178	PREDICTED: serine/threonine-protein kinase At3g07070-like [Citrus sinensis]
Swissprot	tr\|Q9SFT7\|Y3707_ARATH	2E-164	Serine/threonine-protein kinase At3g07070
trEMBL	tr\|A0A067DG39\|A0A067DG39_CITSI	9E-179	Uncharacterized protein {ECO:0000313\|EMBL:KDO37992.1}
TAIR10	AT3G07070.1	2E-130	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	5113349	5115532	+
GWHAAZE00000002	mRNA	5113349	5115532	+
GWHAAZE00000002	exon	5113349	5113448	+
GWHAAZE00000002	exon	5113800	5113990	+
GWHAAZE00000002	exon	5114205	5114394	+
GWHAAZE00000002	exon	5114485	5114864	+
GWHAAZE00000002	exon	5115071	5115532	+
GWHAAZE00000002	CDS	5113349	5113448	+
GWHAAZE00000002	CDS	5113800	5113990	+
GWHAAZE00000002	CDS	5114205	5114394	+
GWHAAZE00000002	CDS	5114485	5114864	+
GWHAAZE00000002	CDS	5115071	5115532	+

Transcript Sequence
>GWHTAAZE005265 ATGAGTTGTTTCCCATGTTTTGCGAGTAAGAAATCCAAGGAGGAGGATGTCCCTGTAGCTCAGACCAAAGAGCCGACTTCTGAACCACCACCCCCGGCAGCCAAAAGTAAAGAAGCCCCCGAAAACAAAACTGATCAGAATGCCAACACAGTTGACGGTCAAAACATTGCAGCCCAGACTTTCAATTTTCGGGAACTAGCCACCGCCACCAAGAATTTCCGCCAGGAATGCCTATTGGGCGAAGGTGGATTTGGACGAGTTTATAAGGGCACGCTTCAATCTAATGGACAGATAGTGGCAGTTAAGCAACTAGACAGGAATGGTATGCAAGGAAACAAGGAGTTCCTTGTGGAGGTATTGATGTTGAGTCTCCTCCACCATCCTAATCTGGTAAATCTCATCGGATATTGCGCTGATGGTGAACAGAGACTTTTAGTTCACGAATACATGCCATTTGGTTCCCTTGAAGATCATCTTTTCGGAGAGAAAAAAACGTTAGATTGGATAACGAGGATGAAAATAGCATCAGGTGCTGCACAAGGACTGGAGTACTTGCATGAGAAGGCAAATCCACCAGTAATATACAGAGACTTAAAATCGTCCAACATATTGTTGGATGAAGAATTTAATCCAAAACTGACCGATTTTGGGCTGGCAAAGCTAGCGGGGAATAAGATGGAGCAAGCACCGTCGAGGGTGATGGGAACTTATGGATATTCAGCACCAGAGTATGAAAGAACCGGTGAGCTGACATTGAAGTCAGATATATACAGTTTTGGCGTTATTTTATTGGAGCTCATCTCCGGCCGAAAAGCCATTGATACTTCTCGCCCAACCGAGGAGCAAAATCTAGTCAATTGGGCACAACCCATATTCAAAGACCCGAAAAGATTCCCAGAAATGGCAGATCCACTTCTTAAAAAGGACTTCCCAGTGAGAAGCTTAAACCAAGTGGTTGGGATCGCGGCTATGTGCCTTCAAGACGAAGCATCAGTGCGTCCGTTGATCACTGATGTTGTTGCAGCTCTTAGTTTCCTGATGAAGCCTCAGCCCCAGCCCACTGACGAAGCAGGCCCGCCTAAAGATAAAAAACAAAAGCAAAGGTCTTCTTCGAGTTCATCATCATCATCGTCATCATCATCAGATGAAGAAGAAGAACCTAAAGGGAAAAAGAAAGGTAGTTCACACGGGGATAGTTCAGAGAGTTTATACGGTATTGAGAACGAAGAGGAGAGTGGAGACGAAGCTGATGAGAAACATTCCCGCGGTGGTGACGATCATCATGTTCACGATGGAAGCTCAGAAGAGGAAAATGAAGATTAG

Network for GWHGAAZE005259

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	75	338	1.10E-48

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIIa-1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.090
	SRR3591706	second leaf	0.841
	SRR3591707	mature leaf	2.374
	SRR3591708	Shoot apex	2.415
	SRR3591709	Stem	2.364
	SRR3591710	White floral bud	171.400
	SRR3591711	White flower	11.527
	SRR3591712	Green floral bud	127.522
	SRR3591713	Yellow flower	5.600
SRP173429	SRR8316895	Juvenile bud stage	2.868
	SRR8316896	Juvenile bud stage	4.086
	SRR8316897	Juvenile bud stage	2.023
	SRR8316894	Third green stage	3.627
	SRR8316900	Third green stage	73.963
	SRR8316901	Third green stage	62.702
	SRR8316898	Complete white stage	1.854
	SRR8316899	Complete white stage	4.970
	SRR8316903	Complete white stage	3.367
	SRR8316902	Silver flowering stage	2.678
	SRR8316904	Silver flowering stage	6.288
	SRR8316905	Silver flowering stage	1.440
	SRR8316906	Gold flowering stage	2.133
	SRR8316907	Gold flowering stage	2.153
	SRR8316908	Gold flowering stage	1.278
SRP132670	SRR6706286	Control	48.577
	SRR6706287	Light intensity 50%	47.859
	SRR6706288	Light intensity 20%	42.206
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	23.223
	CNS0095593	Slightly white alabastrum(diploid) 2	24.903
	CNS0095594	Slightly white alabastrum(diploid) 3	15.923
	CNS0095595	Whole white alabastrum(diploid) 2	149.091
	CNS0095596	Whole white alabastrum(diploid) 3	169.884
	CNS0095597	Whole white alabastrum(diploid) 4	214.823
	CNS0095598	Silvery flower (diploied) 1	13.627
	CNS0095599	Silvery flower (diploied) 2	29.361
	CNS0095600	Silvery flower (diploied) 3	7.630
	CNS0095601	Golden flower (diploid) 1	12.997
	CNS0095602	Golden flower (diploid) 2	8.150
	CNS0095603	Golden flower (diploid) 3	8.008
	CNS0095604	Slightly white alabastrum(tetraploid) 1	73.625
	CNS0095605	Slightly white alabastrum(tetraploid) 2	78.870
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.578
	CNS0095607	Whole white alabastrum(tetraploid) 1	229.954
	CNS0095608	Whole white alabastrum(tetraploid) 2	298.207
	CNS0095609	Whole white alabastrum(tetraploid) 3	121.718
	CNS0095610	Silvery flower (tetraploid) 1	6.734
	CNS0095611	Silvery flower (tetraploid) 2	19.140
	CNS0095612	Silvery flower (tetraploid) 3	51.467
	CNS0095613	Golden flower (tetraploid) 1	8.802
	CNS0095614	Golden flower (tetraploid) 2	3.813
	CNS0095615	Golden flower (tetraploid) 3	16.419
CRA001975	CRR073297	Stem 1	14.052
	CRR073298	Stem 2	8.436
	CRR073299	Stem 3	4.870
	CRR073300	Leaf 1	90.965
	CRR073301	Leaf 2	50.695
	CRR073302	Leaf 3	23.237
	CRR073303	Juvenile bud 1	73.355
	CRR073304	Juvenile bud 2	43.755
	CRR073305	Juvenile bud 3	10.186
	CRR073306	Third green 1	29.495
	CRR073307	Third green 2	29.699
	CRR073308	Third green 3	29.408
	CRR073309	Second white 1	1.723
	CRR073310	Second white 2	7.884
	CRR073311	Second white 3	6.162
	CRR073312	Silver flowering 1	30.475
	CRR073313	Silver flowering 2	28.324
	CRR073314	Silver flowering 3	18.669
	CRR073315	Gold flowering 1	16.523
	CRR073316	Gold flowering 2	10.398
	CRR073317	Gold flowering 3	5.284
	CRR073318	Tawny withering 1	48.857
	CRR073319	Tawny withering 2	36.154
	CRR073320	Tawny withering 3	34.692