Gene detail

Detail information of GWHGAAZE005265

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDO46917.1	1.9282E-130	hypothetical protein CISIN_1g017646mg [Citrus sinensis]
Swissprot	tr\|Q945S8\|ASHH3_ARATH	3E-100	Histone-lysine N-methyltransferase ASHH3
trEMBL	tr\|A0A067E6P8\|A0A067E6P8_CITSI	7E-131	Uncharacterized protein {ECO:0000313\|EMBL:KDO46917.1}
TAIR10	AT2G44150.1	2E-81	histone-lysine N-methyltransferase ASHH3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	5177773	5183690	+
GWHAAZE00000002	mRNA	5177773	5183690	+
GWHAAZE00000002	exon	5177773	5177806	+
GWHAAZE00000002	exon	5177930	5177988	+
GWHAAZE00000002	exon	5179698	5179771	+
GWHAAZE00000002	exon	5180556	5180682	+
GWHAAZE00000002	exon	5180874	5180985	+
GWHAAZE00000002	exon	5181156	5181202	+
GWHAAZE00000002	exon	5181298	5181332	+
GWHAAZE00000002	exon	5181954	5182053	+
GWHAAZE00000002	exon	5182398	5182476	+
GWHAAZE00000002	exon	5182583	5182754	+
GWHAAZE00000002	exon	5182836	5182904	+
GWHAAZE00000002	exon	5183083	5183260	+
GWHAAZE00000002	exon	5183443	5183461	+
GWHAAZE00000002	exon	5183590	5183690	+
GWHAAZE00000002	five_prime_UTR	5177773	5177806	+
GWHAAZE00000002	five_prime_UTR	5177930	5177988	+
GWHAAZE00000002	five_prime_UTR	5179698	5179771	+
GWHAAZE00000002	five_prime_UTR	5180556	5180682	+
GWHAAZE00000002	five_prime_UTR	5180874	5180912	+
GWHAAZE00000002	CDS	5180913	5180985	+
GWHAAZE00000002	CDS	5181156	5181202	+
GWHAAZE00000002	CDS	5181298	5181332	+
GWHAAZE00000002	CDS	5181954	5182053	+
GWHAAZE00000002	CDS	5182398	5182476	+
GWHAAZE00000002	CDS	5182583	5182754	+
GWHAAZE00000002	CDS	5182836	5182904	+
GWHAAZE00000002	CDS	5183083	5183260	+
GWHAAZE00000002	CDS	5183443	5183461	+
GWHAAZE00000002	CDS	5183590	5183690	+

Transcript Sequence
>GWHTAAZE005271 ACGCAATCGCGTAGAGATTTCAGCCACCGTCAAGGGTTTCTTGTTTTCGGCTGGGAGATCATCGGCTGCACTCTTGCGCTCCTCTGTCTCAAGGTGCACTCTTGAAAGTGAACAGCAGGAGGAAGATTTGTTGGATGATGAGTCAATTAGTTAGTTCTTCTTGTCAGACCGAACGCAGTGACATAGGGCATGTATTCGACAAACTGATGAAGGATATTACATATCCCAGGGACTTTGCACTCCCAGATTGGTTAAATAAATGGAAGCCTGTGCACTACACCTTTATAAAGCGCAATATATATCTCACTAAGAAGATTAAGAGACGCCTGGAGGATGATGGCATATTCTGTTCGTGTAGCTCACAAGTGGGTTCTTCTGGTGTGTGCGGTAGAGATTGTCACTGCGGGGCTGCAAACTGCTTTTGTTGGCTTATTATGCATAGGATATAGGCAGAAACAGAAGGTGTTATTACCTCTGTACAAGCTTGGGATGCTATTGTCTAGCTGCTCCTCAGGATGTAAATGTGGGAATTCTTGTCTTAATAAACCATTTCATCAACGACCTGCAAAGAAGATGAAAATAGTGCAGACAGAAAAATGTGGATCGGGGGTTGTGGCTGATGAAGATATTAAGCAAGGAGAGTTTGTAATTGAATACGTGGGAGAAGTTATCGATGACGAAACATGTGAGGAAAGGCTTTGGCAAATGAAAGCCCGTGGGGAAACAAACTTTTACTTGTGTGAAATCAACCGAGATATGGTGATTGATGCTACATACAAGGGAAACAAATCAAGATACATTAATCATAGTTGTTGTCCCAACACTGAAATGCAGAAATGGAGGATTGATGGTGAAACAAGGATTGGCATATTTGCAACTTGTGACATAAAAAAGGGAGAGCACTTGACGTTTGTTCAATTTGGTGCAGATCAAGATTGCCACTGTGGTGCTGCGGGATGCAGGCGAAAACTGGGAGTTAAACCTAATAAGCCTAAAACACCTTCATCCGATGCTGCACTGAAAATAGTTGCATACCATTTGGCTGTAGACTCTCCCAAAGTGAAAGCAATATTATCAGGGAAAGATGATGGAGTTCTACAAATAGGAAGTTCAAGGCATGATCCTAATCAGGGGAGAGGGTTCCCTCATAATTGCATTGGGGAAGTTATTAGAATAATACGCCCCAAGGATGAGAGGTATTCCTAA

Network for GWHGAAZE005265

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00856.29	SET	90	193	1.30E-17

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	SET

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	30.268
	SRR3591706	second leaf	26.087
	SRR3591707	mature leaf	23.933
	SRR3591708	Shoot apex	35.654
	SRR3591709	Stem	31.216
	SRR3591710	White floral bud	22.593
	SRR3591711	White flower	27.204
	SRR3591712	Green floral bud	23.366
	SRR3591713	Yellow flower	24.148
SRP173429	SRR8316895	Juvenile bud stage	17.660
	SRR8316896	Juvenile bud stage	23.978
	SRR8316897	Juvenile bud stage	12.594
	SRR8316894	Third green stage	11.656
	SRR8316900	Third green stage	22.112
	SRR8316901	Third green stage	24.061
	SRR8316898	Complete white stage	9.033
	SRR8316899	Complete white stage	36.540
	SRR8316903	Complete white stage	16.391
	SRR8316902	Silver flowering stage	8.357
	SRR8316904	Silver flowering stage	13.829
	SRR8316905	Silver flowering stage	7.123
	SRR8316906	Gold flowering stage	22.746
	SRR8316907	Gold flowering stage	18.911
	SRR8316908	Gold flowering stage	23.967
SRP132670	SRR6706286	Control	29.176
	SRR6706287	Light intensity 50%	27.745
	SRR6706288	Light intensity 20%	29.272
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	18.451
	CNS0095593	Slightly white alabastrum(diploid) 2	16.632
	CNS0095594	Slightly white alabastrum(diploid) 3	14.076
	CNS0095595	Whole white alabastrum(diploid) 2	14.783
	CNS0095596	Whole white alabastrum(diploid) 3	10.504
	CNS0095597	Whole white alabastrum(diploid) 4	12.616
	CNS0095598	Silvery flower (diploied) 1	20.350
	CNS0095599	Silvery flower (diploied) 2	20.535
	CNS0095600	Silvery flower (diploied) 3	13.864
	CNS0095601	Golden flower (diploid) 1	18.287
	CNS0095602	Golden flower (diploid) 2	14.385
	CNS0095603	Golden flower (diploid) 3	14.424
	CNS0095604	Slightly white alabastrum(tetraploid) 1	16.732
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.352
	CNS0095606	Slightly white alabastrum(tetraploid) 3	27.897
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.931
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.013
	CNS0095609	Whole white alabastrum(tetraploid) 3	17.156
	CNS0095610	Silvery flower (tetraploid) 1	21.188
	CNS0095611	Silvery flower (tetraploid) 2	18.188
	CNS0095612	Silvery flower (tetraploid) 3	14.353
	CNS0095613	Golden flower (tetraploid) 1	12.581
	CNS0095614	Golden flower (tetraploid) 2	19.969
	CNS0095615	Golden flower (tetraploid) 3	9.451
CRA001975	CRR073297	Stem 1	25.450
	CRR073298	Stem 2	22.083
	CRR073299	Stem 3	14.450
	CRR073300	Leaf 1	24.498
	CRR073301	Leaf 2	18.187
	CRR073302	Leaf 3	13.530
	CRR073303	Juvenile bud 1	12.043
	CRR073304	Juvenile bud 2	12.304
	CRR073305	Juvenile bud 3	8.883
	CRR073306	Third green 1	2.453
	CRR073307	Third green 2	2.752
	CRR073308	Third green 3	4.228
	CRR073309	Second white 1	1.775
	CRR073310	Second white 2	2.749
	CRR073311	Second white 3	2.867
	CRR073312	Silver flowering 1	1.034
	CRR073313	Silver flowering 2	0.841
	CRR073314	Silver flowering 3	1.131
	CRR073315	Gold flowering 1	6.489
	CRR073316	Gold flowering 2	15.174
	CRR073317	Gold flowering 3	5.863
	CRR073318	Tawny withering 1	10.139
	CRR073319	Tawny withering 2	13.729
	CRR073320	Tawny withering 3	12.288