Gene detail

Detail information of GWHGAAZE005267

Functional Annotation

Database	Orthologs	Annotation
Nr	KDP23307.1	hypothetical protein JCGZ_23140 [Jatropha curcas]
Swissprot	tr\|Q93VK5\|LUT5_ARATH	Protein LUTEIN DEFICIENT 5, chloroplastic (Precursor)
trEMBL	tr\|A0A067JHH5\|A0A067JHH5_JATCU	Uncharacterized protein {ECO:0000313\|EMBL:KDP23307.1}
TAIR10	AT1G31800.1	cytochrome P450, family 97, subfamily A, polypeptide 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	5199240	5206023	+
GWHAAZE00000002	mRNA	5199240	5206023	+
GWHAAZE00000002	exon	5199240	5199354	+
GWHAAZE00000002	exon	5199433	5199595	+
GWHAAZE00000002	exon	5199857	5200073	+
GWHAAZE00000002	exon	5200183	5200254	+
GWHAAZE00000002	exon	5200767	5200877	+
GWHAAZE00000002	exon	5201003	5201194	+
GWHAAZE00000002	exon	5201310	5201471	+
GWHAAZE00000002	exon	5201835	5201930	+
GWHAAZE00000002	exon	5202009	5202110	+
GWHAAZE00000002	exon	5203291	5203323	+
GWHAAZE00000002	exon	5203437	5203517	+
GWHAAZE00000002	exon	5203631	5203713	+
GWHAAZE00000002	exon	5203817	5203948	+
GWHAAZE00000002	exon	5205132	5205192	+
GWHAAZE00000002	exon	5205334	5205399	+
GWHAAZE00000002	exon	5205491	5206023	+
GWHAAZE00000002	CDS	5199240	5199354	+
GWHAAZE00000002	CDS	5199433	5199595	+
GWHAAZE00000002	CDS	5199857	5200073	+
GWHAAZE00000002	CDS	5200183	5200254	+
GWHAAZE00000002	CDS	5200767	5200877	+
GWHAAZE00000002	CDS	5201003	5201194	+
GWHAAZE00000002	CDS	5201310	5201471	+
GWHAAZE00000002	CDS	5201835	5201930	+
GWHAAZE00000002	CDS	5202009	5202110	+
GWHAAZE00000002	CDS	5203291	5203323	+
GWHAAZE00000002	CDS	5203437	5203517	+
GWHAAZE00000002	CDS	5203631	5203713	+
GWHAAZE00000002	CDS	5203817	5203948	+
GWHAAZE00000002	CDS	5205132	5205192	+
GWHAAZE00000002	CDS	5205334	5205399	+
GWHAAZE00000002	CDS	5205491	5205676	+
GWHAAZE00000002	three_prime_UTR	5205677	5206023	+

Transcript Sequence
>GWHTAAZE005273 ATGGCTGCTAATTTTCCACTCCTTCAATTCTCATCACACTCCCTTCAATCAAAAGTTCAGACAAAGAGATTGAAATTCTCAAACGCATCTACTACTTCAATCGCCAAACTCAACAGAACTTGTCGTAGCTCTGTAATCAGATGTGCCTCTTCAAATGGGCGAGAACCCGATTCGATTGACGATGGTGTGAATAATGTAGAGAAGTTAGTTGAAGAAAAACGCCGTGCCGAATTGTCCGCTCGTATTGCTTCCGGGGAGTTCACCGTAGAAAAAACTGGTTTTCAATCACTGTTGAGGAATGGTTTGTCCAAATTGGGGGTACCTAGTGAGTTTCTTGAATCCTTATCTAAGTGGATTGATGCTGGTGAAGATTATCCAAAGATTCCAGAGGCAAAAGGAGCAATTAGTGCCATTCGGAGCGAGGCATTTTTCATCCCCTTATATGAACTCTACCTCACCTATGGTGGAATTTTCAGATTGACATTTGGTCCCAAGTCTTTTCTGATAGTTTCTGATCCTTCCATTGCCAAACACATATTGAGGGACAACTCAAAGGCTTATTCAAAGGGTATCCTGGCAGAAATTCTAGAATTTGTAATGGGGACGGGTCTTATCCCAGCTGATGGAGATGTTTGGCGTGTTAGACGGCGTGCTATAGTCCCATCATTACATCAGAAGTACGTAGCGGCAATGATTAGCTTGTTTGGAAAAGCTACAGATAGGCTTTGCAGAAAGCTTGATGCTGCCGCATATGACGGTGAGGATGTGGAGATGGAGTCACTTTTCTCTCGTTTGACATTGGATATTATAGGGAAAGCAGTATTTAATTATGATTTTGATTCTCTAACAAACGATACTGGGATAGTTGAGGCAGTATATACTGTCTTGAGAGAGGCAGAAGATCGAAGTGTAGCACCAATACCATTTTGGGAGATACCCATATGGAAAGATATCTCACCAAAGCAGAAAAAGGTCAATGAGGCCCTTAAGCTGATCAATGGTACTCTGGATAATTTGATTGCAATATGTAAGAGAATGGTAGAAGAAGAAGAGTTACAGTTTCACGAGGAATACATGAATGAAAATGATCCTAGTATTCTCCACTTTCTGTTGGCATCAGGAGATGATGTCTCAAGCAAGCAACTACGTGATGATCTCATGACAATGCTTATAGCTGGACATGAAACAACTGCTGCAGTGCTGACCTGGACATTTTATCTTCTTACCAAGGAACCTAGTGTTATGGCTAAGCTTCAAAATGAGGTTGATTCAGTTTTAGGCGATCGCTATCCAACCATTGAAGACATGAAGAAACTTAGATATACTACTCGAGTCATCAATGAATCATTGAGGCTCTACCCACAACCCCCTGTTCTGATTCGCCGTTCTATCATTGATGATATACTTGGCAAATACCCAATTAAAAGGGGTGAAGATATTTTTATTTCTGTATGGAACCTACATCGGTGTCCTAAACATTGGGAAGATGCAGAAAAGTTTAATCCTGAAAGATGGCCTTTAGATGGACCGAATCCAAATGAGACCAACCAAAATTTCAGTTACTTGCCCTTTGGCGGAGGACCGAGGAAATGCGTGGGAGACATGTTTGCTTCATTTGAGGCTGTAGTTGCAGTAGCCATGCTTGTTCAACGTTTCAACTTCCAAATGGCACTTGGAGCTCCTCCAGTGCGTATGACTACAGGAGCAACGATACACACCACAGAAGGATTGAAGATGACTGTTACACAGCGAATAAAACCTCCAGTAGTCCCCACGGTGGATATGCCTAAGTTGAAAGTGGATGATTCATCTTTAAGCGCTGGCCAAGCGGAGCCAGTCATGAAAAGTGAAGTTTCGTCAGCACGTTCCTAATGTTAGTTACTCCTCCAAGGAATTCAGTCAATTTATCCGACCTTCAAGTTTGTAAATTTGTTGTAAAGTTGATTGTAAAGCACATATATAATTTTTCTGATCAAGAGTCACTTTCCCATTTTTGATCCTATCGAAGTGCATTTTATACTCCCCCTCATGTTCTTGCAACCCGATCTCTCTATAGTTGTTGGACACCACCATAAACTTTTGAATTCAGATCAAGTTCCATGTTTTTATTTTCACAAGCTTGAATAATTTGGTGCTGCAAAAACAAGAAACTTTTGCAGTCACACACCACTTTAATTTCAATTCAAACATTTACACGCAAAGAGCAGTCATACTCGCCA

Network for GWHGAAZE005267

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00067.23	p450	148	569	1.90E-88

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15747	LUT5, CYP97A3	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Carotenoid biosynthesis	map00906

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0005506	molecular_function	iron ion binding
GO:0016705	molecular_function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037	molecular_function	heme binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	30.876
	SRR3591706	second leaf	64.544
	SRR3591707	mature leaf	72.333
	SRR3591708	Shoot apex	42.751
	SRR3591709	Stem	29.290
	SRR3591710	White floral bud	31.864
	SRR3591711	White flower	46.094
	SRR3591712	Green floral bud	40.651
	SRR3591713	Yellow flower	47.867
SRP173429	SRR8316895	Juvenile bud stage	18.905
	SRR8316896	Juvenile bud stage	24.528
	SRR8316897	Juvenile bud stage	13.395
	SRR8316894	Third green stage	11.954
	SRR8316900	Third green stage	43.439
	SRR8316901	Third green stage	35.306
	SRR8316898	Complete white stage	15.722
	SRR8316899	Complete white stage	42.401
	SRR8316903	Complete white stage	28.282
	SRR8316902	Silver flowering stage	21.567
	SRR8316904	Silver flowering stage	31.548
	SRR8316905	Silver flowering stage	16.388
	SRR8316906	Gold flowering stage	57.414
	SRR8316907	Gold flowering stage	53.249
	SRR8316908	Gold flowering stage	55.801
SRP132670	SRR6706286	Control	29.284
	SRR6706287	Light intensity 50%	32.582
	SRR6706288	Light intensity 20%	38.042
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	16.494
	CNS0095593	Slightly white alabastrum(diploid) 2	18.622
	CNS0095594	Slightly white alabastrum(diploid) 3	17.833
	CNS0095595	Whole white alabastrum(diploid) 2	19.492
	CNS0095596	Whole white alabastrum(diploid) 3	20.313
	CNS0095597	Whole white alabastrum(diploid) 4	18.217
	CNS0095598	Silvery flower (diploied) 1	25.271
	CNS0095599	Silvery flower (diploied) 2	24.957
	CNS0095600	Silvery flower (diploied) 3	53.919
	CNS0095601	Golden flower (diploid) 1	24.301
	CNS0095602	Golden flower (diploid) 2	45.075
	CNS0095603	Golden flower (diploid) 3	44.392
	CNS0095604	Slightly white alabastrum(tetraploid) 1	23.291
	CNS0095605	Slightly white alabastrum(tetraploid) 2	19.413
	CNS0095606	Slightly white alabastrum(tetraploid) 3	40.154
	CNS0095607	Whole white alabastrum(tetraploid) 1	15.309
	CNS0095608	Whole white alabastrum(tetraploid) 2	15.496
	CNS0095609	Whole white alabastrum(tetraploid) 3	41.000
	CNS0095610	Silvery flower (tetraploid) 1	60.428
	CNS0095611	Silvery flower (tetraploid) 2	71.433
	CNS0095612	Silvery flower (tetraploid) 3	65.084
	CNS0095613	Golden flower (tetraploid) 1	43.980
	CNS0095614	Golden flower (tetraploid) 2	58.885
	CNS0095615	Golden flower (tetraploid) 3	52.890
CRA001975	CRR073297	Stem 1	28.143
	CRR073298	Stem 2	25.115
	CRR073299	Stem 3	25.433
	CRR073300	Leaf 1	32.438
	CRR073301	Leaf 2	29.559
	CRR073302	Leaf 3	25.258
	CRR073303	Juvenile bud 1	27.687
	CRR073304	Juvenile bud 2	25.017
	CRR073305	Juvenile bud 3	26.679
	CRR073306	Third green 1	10.512
	CRR073307	Third green 2	6.438
	CRR073308	Third green 3	9.209
	CRR073309	Second white 1	22.791
	CRR073310	Second white 2	30.820
	CRR073311	Second white 3	28.693
	CRR073312	Silver flowering 1	30.969
	CRR073313	Silver flowering 2	30.023
	CRR073314	Silver flowering 3	24.647
	CRR073315	Gold flowering 1	49.563
	CRR073316	Gold flowering 2	84.728
	CRR073317	Gold flowering 3	41.694
	CRR073318	Tawny withering 1	12.009
	CRR073319	Tawny withering 2	11.694
	CRR073320	Tawny withering 3	15.392