Gene detail

Detail information of GWHGAAZE005278

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011101976.1	0	PREDICTED: ethanolamine-phosphate cytidylyltransferase [Sesamum indicum]
Swissprot	tr\|Q9ZVI9\|PECT1_ARATH	0	Ethanolamine-phosphate cytidylyltransferase
trEMBL	tr\|K4D1R2\|K4D1R2_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc10g074700.1.1}
TAIR10	AT2G38670.1	1E-176	phosphorylethanolamine cytidylyltransferase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	5341945	5354107	+
GWHAAZE00000002	mRNA	5341945	5354107	+
GWHAAZE00000002	exon	5341945	5342417	+
GWHAAZE00000002	exon	5343794	5344029	+
GWHAAZE00000002	exon	5344815	5344996	+
GWHAAZE00000002	exon	5345338	5345409	+
GWHAAZE00000002	exon	5345829	5345935	+
GWHAAZE00000002	exon	5347526	5347646	+
GWHAAZE00000002	exon	5352951	5353016	+
GWHAAZE00000002	exon	5353082	5353216	+
GWHAAZE00000002	exon	5353818	5353863	+
GWHAAZE00000002	exon	5354022	5354107	+
GWHAAZE00000002	five_prime_UTR	5341945	5342094	+
GWHAAZE00000002	CDS	5342095	5342417	+
GWHAAZE00000002	CDS	5343794	5344029	+
GWHAAZE00000002	CDS	5344815	5344996	+
GWHAAZE00000002	CDS	5345338	5345409	+
GWHAAZE00000002	CDS	5345829	5345935	+
GWHAAZE00000002	CDS	5347526	5347646	+
GWHAAZE00000002	CDS	5352951	5353016	+
GWHAAZE00000002	CDS	5353082	5353216	+
GWHAAZE00000002	CDS	5353818	5353863	+
GWHAAZE00000002	CDS	5354022	5354107	+

Transcript Sequence
>GWHTAAZE005284 GGAAAGAACGAACGAGAGAAAAAGAGCCCCCCAAAAAAGGAAGAATAAAAGAAAAAAAACGAATCACAAAGGAAAAAGTAAAATTAGAAAGCAATATATTTGGATGACAAATCTAGTTTATTTTTGAAAAGCGCGTTTACCGACAGAGATATGGCTTCTTCAGATGCAGGGCACTCTGAAAATATACAGATTTCGAGGTTTTTAGCGACATGGCTGATAGGCGGTGTGGTGCTAGGTGTGTCGGTGATAGGGTTCTGCTTTGCTCTGCCACGAAAGCCGTTGGGGAATTGGAGGAGGAAGAAGAAGAGGCCAGTTAGGGTTTACATGGATGGATGCTTCGATATGATGCATTATGGCCATTGCAACGCCCTTCGTCAGGCCCGAGCCCTAGGGGACCAATTGGTTGTCGGTGTTGTTAGCGATGCCGAAATCATTGCAAATAAAGGCCCTCCCGTTACTCCTCTCAGCGAAAGGATGATCATGGTTAGTGCTGTGAAGTGGGTGGATGAGGTTATTTCTGATGCACCTTATGCTATAACTGAAGAATTTATGAAGAAGCTATTTGATGAATATAATATAGACTATATTATTCATGGGGATGACCCATGCATTCTCCCAGATGGAAGTGATGCATATGCCCTTGCCAAGAAGGCCGGCCGCTATAAGCAGATTAAGCGCACGGAAGGAGTGTCAAGCACTGATATTGTTGGTCGTATGCTTCTCTGTGTGAGAGAGAGGTCGACTAGTGACAGCCACAATCATTCTTCCTTGCAAAGACAATTCAGCCATGGTCACGGCCAAAAATCTGATGATCGTAGCTCTGGTAGTGGAACATGGGTTTCACATTTTCTACCCACATCTCGCAGAATTGTGCAGTTCTCCAATGGGAAGGGGCCTGGACCAGATGCTCGCGTAGTTTATATAGACGGTGCGTTTGACCTTTTCCATGCTGGACATGTTGAGAGTTCGGAGTCATGTAATGAAACATCAAGTGATTCACAGATATTGAGGCTTGCTAGGGAGCTTGGAGATTTTTTGCTTGTTGGGATCCACACTGATCAAACTATCAGTACCAATAGAGGAGTCCACCGCCCAATCATGAATCTTCATGAAAGGAGCTTAAGCGTTTTGGCTTGCCGATATGTAGATGAGGTGATCATTGGTGCTCCATGGGAAGTGTCAAAAGATATGATAGCAACCTTTAATATCTCTCTAGTTGTCCACGGAAGAGTGGCAGAAGATAATGATTATCAGAAGTTCTTCTTACAGGAAAATCGGAATCCATATGAAGTTCCAATCAGTATGGGTATCCTTCAAGTGTTGGACAGTCCTCTAGATATTACAACTAGCACTATAATAAGGAGGATTGTATCAAATCACGAGGCTTATCAGAAGCGCAATGAGAGGAAGGGAGAAAGTGAGAGACGGTATTACGAGGATGATCCACTGTGGAGAGAAGAAAGAGAGATTTGTTTGGGGGTGGTTGTTCAAGTTAAATGCCAAGCCGTTGAAATCCAGTTTTGA

Network for GWHGAAZE005278

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01467.27	CTP_transf_like	58	186	1.60E-25
PF01467.27	CTP_transf_like	257	382	9.50E-10

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00967	PCYT2	Metabolic pathways	map01100
		Glycerophospholipid metabolism	map00564
		Phosphonate and phosphinate metabolism	map00440

Gene Ontology

GO term	Ontology	Name
GO:0009058	biological_process	biosynthetic process
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	25.739
	SRR3591706	second leaf	22.420
	SRR3591707	mature leaf	13.265
	SRR3591708	Shoot apex	24.988
	SRR3591709	Stem	18.875
	SRR3591710	White floral bud	36.293
	SRR3591711	White flower	17.764
	SRR3591712	Green floral bud	34.716
	SRR3591713	Yellow flower	14.782
SRP173429	SRR8316895	Juvenile bud stage	14.328
	SRR8316896	Juvenile bud stage	21.301
	SRR8316897	Juvenile bud stage	12.017
	SRR8316894	Third green stage	9.270
	SRR8316900	Third green stage	24.476
	SRR8316901	Third green stage	25.790
	SRR8316898	Complete white stage	12.765
	SRR8316899	Complete white stage	28.280
	SRR8316903	Complete white stage	17.502
	SRR8316902	Silver flowering stage	12.261
	SRR8316904	Silver flowering stage	15.483
	SRR8316905	Silver flowering stage	7.895
	SRR8316906	Gold flowering stage	25.290
	SRR8316907	Gold flowering stage	23.844
	SRR8316908	Gold flowering stage	28.797
SRP132670	SRR6706286	Control	18.528
	SRR6706287	Light intensity 50%	21.953
	SRR6706288	Light intensity 20%	21.030
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	16.686
	CNS0095593	Slightly white alabastrum(diploid) 2	17.828
	CNS0095594	Slightly white alabastrum(diploid) 3	16.244
	CNS0095595	Whole white alabastrum(diploid) 2	15.499
	CNS0095596	Whole white alabastrum(diploid) 3	15.093
	CNS0095597	Whole white alabastrum(diploid) 4	17.779
	CNS0095598	Silvery flower (diploied) 1	15.699
	CNS0095599	Silvery flower (diploied) 2	15.401
	CNS0095600	Silvery flower (diploied) 3	16.706
	CNS0095601	Golden flower (diploid) 1	11.244
	CNS0095602	Golden flower (diploid) 2	17.076
	CNS0095603	Golden flower (diploid) 3	17.118
	CNS0095604	Slightly white alabastrum(tetraploid) 1	18.035
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.670
	CNS0095606	Slightly white alabastrum(tetraploid) 3	31.173
	CNS0095607	Whole white alabastrum(tetraploid) 1	19.971
	CNS0095608	Whole white alabastrum(tetraploid) 2	20.728
	CNS0095609	Whole white alabastrum(tetraploid) 3	20.639
	CNS0095610	Silvery flower (tetraploid) 1	19.730
	CNS0095611	Silvery flower (tetraploid) 2	13.406
	CNS0095612	Silvery flower (tetraploid) 3	14.698
	CNS0095613	Golden flower (tetraploid) 1	9.392
	CNS0095614	Golden flower (tetraploid) 2	14.125
	CNS0095615	Golden flower (tetraploid) 3	15.340
CRA001975	CRR073297	Stem 1	25.628
	CRR073298	Stem 2	20.574
	CRR073299	Stem 3	22.929
	CRR073300	Leaf 1	25.515
	CRR073301	Leaf 2	23.719
	CRR073302	Leaf 3	21.898
	CRR073303	Juvenile bud 1	21.824
	CRR073304	Juvenile bud 2	23.705
	CRR073305	Juvenile bud 3	19.266
	CRR073306	Third green 1	12.371
	CRR073307	Third green 2	13.601
	CRR073308	Third green 3	13.396
	CRR073309	Second white 1	9.191
	CRR073310	Second white 2	10.459
	CRR073311	Second white 3	11.582
	CRR073312	Silver flowering 1	15.343
	CRR073313	Silver flowering 2	12.922
	CRR073314	Silver flowering 3	14.122
	CRR073315	Gold flowering 1	14.775
	CRR073316	Gold flowering 2	18.619
	CRR073317	Gold flowering 3	14.079
	CRR073318	Tawny withering 1	27.301
	CRR073319	Tawny withering 2	23.148
	CRR073320	Tawny withering 3	27.327