Gene detail

Detail information of GWHGAAZE005280

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009606105.1	0	PREDICTED: serine/threonine-protein kinase At5g01020 isoform X1 [Nicotiana tomentosiformis]
Swissprot	tr\|Q8GXZ3\|Y5102_ARATH	0	Serine/threonine-protein kinase At5g01020
trEMBL	tr\|A0A067FLB9\|A0A067FLB9_CITSI	0	Uncharacterized protein {ECO:0000313\|EMBL:KDO64217.1}
TAIR10	AT5G01020.1	8E-164	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	5392621	5397050	-
GWHAAZE00000002	mRNA	5392621	5397050	-
GWHAAZE00000002	exon	5392621	5393138	-
GWHAAZE00000002	exon	5393762	5393885	-
GWHAAZE00000002	exon	5394032	5394176	-
GWHAAZE00000002	exon	5395103	5395227	-
GWHAAZE00000002	exon	5396209	5396546	-
GWHAAZE00000002	exon	5396996	5397050	-
GWHAAZE00000002	CDS	5396996	5397050	-
GWHAAZE00000002	CDS	5396209	5396546	-
GWHAAZE00000002	CDS	5395103	5395227	-
GWHAAZE00000002	CDS	5394032	5394176	-
GWHAAZE00000002	CDS	5393762	5393885	-
GWHAAZE00000002	CDS	5392621	5393138	-

Transcript Sequence
>GWHTAAZE005286 ATGGGCAACTGTGGGACTAGAGAGGAATCTTCTGTCATCTCCAATGCTCACCAAGTTCAGCAGCTCCAGATATTATCCATCCCCAGTAAGAATCAAGCTCCAGAGAAGAAGAGGACTCGTTCCATTTCAGATCTAAGTGATCCTTCGACCCCTCGCAATCTTGAGGACTCTAGAAAGAACGCTGTGCTCTACACTCATGTGATTGCCTTCACCCTGTTCGAGCTCGAGACCATTACCAAGAGCTTCCGCTCTGACTACATTCTTGGTGAGGGCGGTTTTGGAACCGTCTACAAGGGTTACATCGACGAGAACGTGAGGGTCGGCCTTAAATCTCTCCCTGTTGCTGTCAAGGTCCTGAACAAGGAGGGCCTTCAGGGACACAGAGAATGGCTTAGTATCAACACAGATGGATATAATACAAGTGTTCTTGATATCTTCCTTGGGTGTTGCCGAGCTAAACAGTACCTAGCTGCTTTACCTACGCCTCTAATTGGTGAAAAAATCGAGCATCCTCCTAGGCATTCAGAGGCAACAGTTCCACTATCGTGGCCAACAAGAATGATGATTGCTCTTGGAGCAGCTAAAGGGCTTGCTTTTCTTCACAATGCTGAAAGACCTGTTATCTATAGAGATTTCAAGACTTCCAATATATTATTGGACTCTGATTATACAGCCAAGCTATCTGATTTTGGTCTTGCAAAAGCTGGGCCACAAGGCGATGAGACCCATGTATCAACTCGAGTAATGGGTACCTATGGCTATGCTGCTCCTGAATATGTCATGACTGGACACCTTACTGCGAGGAGCGACGTGTACAGCTTTGGAGTTGTACTACTAGAGTTATTGACAGGTAGGAAGTCTGTTGACAAGACGAGGCCAAGCAAGGAGCAGAGCTTGGTGGATTGGGCCCGCCCAAAGCTCAATGACAAGAGAAAACTGCTGCAAATTATAGACCCTAGATTAGAGAACCAGTACTCAGTAAGGGCGGCTCAAAAAGCTTGCAGTTTGGCTTACTACTGCCTAAGCCAGAACCCCAAAGCTCGACCCTTAATGAGCGATGTTGTCGACACTTTAGAGCCTCTACAAAGCAGTAGTAATAGCGCAAAAGAAGTCTCATTATCATCTTCATCATCATCGACAATCCCTCTTATGGTCAGTGGTGGTAGTCCATTTGCCTTGGGGAGTTTCCCCGAGTACCGGATGCATGATAGATTTGCTGGCACTGTTGGTGCTGGCGGGTCGGGTTGTAGGTCCCCAAACCCGAACTGTTCTCCGGGTGGGCCTGCAGCGTGTCGGGTTAGATGA

Network for GWHGAAZE005280

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	85	355	6.10E-32

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIIa-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	21.437
	SRR3591706	second leaf	49.018
	SRR3591707	mature leaf	31.376
	SRR3591708	Shoot apex	60.309
	SRR3591709	Stem	38.022
	SRR3591710	White floral bud	10.107
	SRR3591711	White flower	10.328
	SRR3591712	Green floral bud	17.608
	SRR3591713	Yellow flower	3.361
SRP173429	SRR8316895	Juvenile bud stage	20.534
	SRR8316896	Juvenile bud stage	20.298
	SRR8316897	Juvenile bud stage	8.497
	SRR8316894	Third green stage	8.516
	SRR8316900	Third green stage	19.761
	SRR8316901	Third green stage	21.634
	SRR8316898	Complete white stage	3.918
	SRR8316899	Complete white stage	30.926
	SRR8316903	Complete white stage	6.154
	SRR8316902	Silver flowering stage	0.834
	SRR8316904	Silver flowering stage	1.192
	SRR8316905	Silver flowering stage	0.660
	SRR8316906	Gold flowering stage	1.293
	SRR8316907	Gold flowering stage	1.218
	SRR8316908	Gold flowering stage	2.435
SRP132670	SRR6706286	Control	22.151
	SRR6706287	Light intensity 50%	20.803
	SRR6706288	Light intensity 20%	24.732
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	19.729
	CNS0095593	Slightly white alabastrum(diploid) 2	24.376
	CNS0095594	Slightly white alabastrum(diploid) 3	18.597
	CNS0095595	Whole white alabastrum(diploid) 2	23.144
	CNS0095596	Whole white alabastrum(diploid) 3	14.017
	CNS0095597	Whole white alabastrum(diploid) 4	15.836
	CNS0095598	Silvery flower (diploied) 1	27.004
	CNS0095599	Silvery flower (diploied) 2	27.838
	CNS0095600	Silvery flower (diploied) 3	8.636
	CNS0095601	Golden flower (diploid) 1	27.930
	CNS0095602	Golden flower (diploid) 2	17.807
	CNS0095603	Golden flower (diploid) 3	18.342
	CNS0095604	Slightly white alabastrum(tetraploid) 1	20.678
	CNS0095605	Slightly white alabastrum(tetraploid) 2	18.938
	CNS0095606	Slightly white alabastrum(tetraploid) 3	49.830
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.863
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.819
	CNS0095609	Whole white alabastrum(tetraploid) 3	20.156
	CNS0095610	Silvery flower (tetraploid) 1	4.615
	CNS0095611	Silvery flower (tetraploid) 2	8.326
	CNS0095612	Silvery flower (tetraploid) 3	3.264
	CNS0095613	Golden flower (tetraploid) 1	1.531
	CNS0095614	Golden flower (tetraploid) 2	5.401
	CNS0095615	Golden flower (tetraploid) 3	0.923
CRA001975	CRR073297	Stem 1	31.128
	CRR073298	Stem 2	31.731
	CRR073299	Stem 3	40.799
	CRR073300	Leaf 1	35.454
	CRR073301	Leaf 2	33.841
	CRR073302	Leaf 3	35.605
	CRR073303	Juvenile bud 1	35.345
	CRR073304	Juvenile bud 2	18.995
	CRR073305	Juvenile bud 3	50.023
	CRR073306	Third green 1	0.982
	CRR073307	Third green 2	2.338
	CRR073308	Third green 3	2.172
	CRR073309	Second white 1	1.121
	CRR073310	Second white 2	0.806
	CRR073311	Second white 3	1.136
	CRR073312	Silver flowering 1	0.291
	CRR073313	Silver flowering 2	1.133
	CRR073314	Silver flowering 3	1.268
	CRR073315	Gold flowering 1	32.393
	CRR073316	Gold flowering 2	33.499
	CRR073317	Gold flowering 3	36.289
	CRR073318	Tawny withering 1	74.309
	CRR073319	Tawny withering 2	76.665
	CRR073320	Tawny withering 3	86.441