Detail information of GWHGAAZE005291


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006481253.10PREDICTED: RING finger and transmembrane domain-containing protein 2-like isoform X1 [Citrus sinensis]
Swissprottr|Q6NPT7|HRD1B_ARATH0.00000001ERAD-associated E3 ubiquitin-protein ligase HRD1B {ECO:0000305}
trEMBLtr|F6HMS9|F6HMS9_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB55954.1}
TAIR10AT5G01960.18E-166RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene55957975601596-
GWHAAZE00000002mRNA55957975601596-
GWHAAZE00000002exon55957975595902-
GWHAAZE00000002exon55963665596496-
GWHAAZE00000002exon55973495597426-
GWHAAZE00000002exon55975875597751-
GWHAAZE00000002exon55979305598018-
GWHAAZE00000002exon55996885599856-
GWHAAZE00000002exon55999785600054-
GWHAAZE00000002exon56006975601346-
GWHAAZE00000002exon56015145601596-
GWHAAZE00000002CDS56015145601596-
GWHAAZE00000002CDS56006975601346-
GWHAAZE00000002CDS55999785600054-
GWHAAZE00000002CDS55996885599856-
GWHAAZE00000002CDS55979305598018-
GWHAAZE00000002CDS55975875597751-
GWHAAZE00000002CDS55973495597426-
GWHAAZE00000002CDS55963665596496-
GWHAAZE00000002CDS55957975595902-
Transcript Sequence

Network for GWHGAAZE005291

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13920.7zf-C3HC4_34434967.50E-09
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf26.727
SRR3591706second leaf14.679
SRR3591707mature leaf16.989
SRR3591708Shoot apex18.157
SRR3591709Stem36.096
SRR3591710White floral bud93.715
SRR3591711White flower41.242
SRR3591712Green floral bud66.374
SRR3591713Yellow flower38.299
SRP173429 SRR8316895Juvenile bud stage 12.656
SRR8316896Juvenile bud stage 22.613
SRR8316897Juvenile bud stage 12.502
SRR8316894Third green stage 9.712
SRR8316900Third green stage 38.827
SRR8316901Third green stage 39.709
SRR8316898Complete white stage 6.205
SRR8316899Complete white stage 23.608
SRR8316903Complete white stage 11.062
SRR8316902Silver flowering stage11.561
SRR8316904Silver flowering stage15.879
SRR8316905Silver flowering stage5.800
SRR8316906Gold flowering stage 29.569
SRR8316907Gold flowering stage 29.534
SRR8316908Gold flowering stage 25.962
SRP132670SRR6706286Control29.981
SRR6706287Light intensity 50%29.276
SRR6706288Light intensity 20%28.742
CNP0000432CNS0095592Slightly white alabastrum(diploid) 136.783
CNS0095593Slightly white alabastrum(diploid) 230.312
CNS0095594Slightly white alabastrum(diploid) 340.908
CNS0095595Whole white alabastrum(diploid) 278.275
CNS0095596Whole white alabastrum(diploid) 385.892
CNS0095597Whole white alabastrum(diploid) 4100.726
CNS0095598Silvery flower (diploied) 126.533
CNS0095599Silvery flower (diploied) 229.840
CNS0095600Silvery flower (diploied) 333.053
CNS0095601Golden flower (diploid) 127.483
CNS0095602Golden flower (diploid) 241.783
CNS0095603Golden flower (diploid) 341.901
CNS0095604Slightly white alabastrum(tetraploid) 164.540
CNS0095605Slightly white alabastrum(tetraploid) 274.437
CNS0095606Slightly white alabastrum(tetraploid) 317.403
CNS0095607Whole white alabastrum(tetraploid) 1115.958
CNS0095608Whole white alabastrum(tetraploid) 2124.952
CNS0095609Whole white alabastrum(tetraploid) 364.506
CNS0095610Silvery flower (tetraploid) 134.880
CNS0095611Silvery flower (tetraploid) 234.603
CNS0095612Silvery flower (tetraploid) 337.223
CNS0095613Golden flower (tetraploid) 128.089
CNS0095614Golden flower (tetraploid) 235.471
CNS0095615Golden flower (tetraploid) 351.149
CRA001975CRR073297Stem 120.571
CRR073298Stem 218.623
CRR073299Stem 314.707
CRR073300Leaf 139.534
CRR073301Leaf 226.077
CRR073302Leaf 318.325
CRR073303Juvenile bud 131.962
CRR073304Juvenile bud 221.308
CRR073305Juvenile bud 314.605
CRR073306Third green 120.003
CRR073307Third green 216.467
CRR073308Third green 317.389
CRR073309Second white 114.420
CRR073310Second white 219.924
CRR073311Second white 319.177
CRR073312Silver flowering 136.950
CRR073313Silver flowering 234.266
CRR073314Silver flowering 331.192
CRR073315Gold flowering 126.597
CRR073316Gold flowering 224.174
CRR073317Gold flowering 324.768
CRR073318Tawny withering 143.184
CRR073319Tawny withering 239.112
CRR073320Tawny withering 338.502