Gene detail

Detail information of GWHGAAZE005304

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002265847.1	2.2615E-145	PREDICTED: eukaryotic translation initiation factor 2 subunit beta [Vitis vinifera]
Swissprot	tr\|O24473\|IF2B_WHEAT	6E-135	Eukaryotic translation initiation factor 2 subunit beta
trEMBL	tr\|F6GU78\|F6GU78_VITVI	8E-146	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB43394.1}
TAIR10	AT5G20920.3	4E-89	eukaryotic translation initiation factor 2 beta subunit

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	5791407	5795286	+
GWHAAZE00000002	mRNA	5791407	5795286	+
GWHAAZE00000002	exon	5791407	5791595	+
GWHAAZE00000002	exon	5792273	5792381	+
GWHAAZE00000002	exon	5792626	5792681	+
GWHAAZE00000002	exon	5792765	5792819	+
GWHAAZE00000002	exon	5792938	5793029	+
GWHAAZE00000002	exon	5793111	5793256	+
GWHAAZE00000002	exon	5794212	5794354	+
GWHAAZE00000002	exon	5794585	5794703	+
GWHAAZE00000002	exon	5795209	5795286	+
GWHAAZE00000002	five_prime_UTR	5791407	5791550	+
GWHAAZE00000002	CDS	5791551	5791595	+
GWHAAZE00000002	CDS	5792273	5792381	+
GWHAAZE00000002	CDS	5792626	5792681	+
GWHAAZE00000002	CDS	5792765	5792819	+
GWHAAZE00000002	CDS	5792938	5793029	+
GWHAAZE00000002	CDS	5793111	5793256	+
GWHAAZE00000002	CDS	5794212	5794354	+
GWHAAZE00000002	CDS	5794585	5794703	+
GWHAAZE00000002	CDS	5795209	5795286	+

Transcript Sequence
>GWHTAAZE005310 GAGTCGTTGAGTATTAGTTCTTAATTTTCCTTTCTTCGTTTTTCTGTTAAATTCAAATTGCTTGATCGAGTGATTGTTTGTTTTAGATCATCTAGAGTTTCTAACGTTTTTGTTTGTGGCGTGACGGCAGATTTTAGATTAATCATGGCAGAAGAAACTCACATGGCGGGCAAAGAAGATGTACCGGAAGTTGTTGCTTTTGATCCCTCTAAGAAGAAGAAGAAAAAGAAGGTTGTAGTCCAGGATCTTGTGGATGATACTGAGGAGCAGTTATCTGAGAAGACAGAGAACTTATCAATTGCTGATGGTGTAGAGAATGCCTTTGTTGGATTGAAAAAGAAGAAGAAGAAACCTGTAGAAACTGATTCATTGAATGATGAGAATGATCCTCCAGAAGAGGAGGTTGATGATCACATAGGAGAGGATGAAGAAGGGGAAGGAATTGTCTTGGAGGCACGGTATCCGTGGGAAGGAAGTGATCGGGATTATGTGTATGAGGAGCTCCTAGGCAGAGTGTTCCATATCCTCAGGGAGAATAACCCAGAGCTTGCCGGAGATAGGCGTAGGACAGTGATGAGGCCACCACAAGTTCTTCGAGAAGGCACTAAGAAGACGGTCTTTGTGAACTTTATGGATCTGTGCAGATCGATGCATAGGCAGCCAGAACATGTTATGACGTTTTTACTGGCTGAAATGGGCACAAGTGGTTCTCTCGATGGGCAACAGAGATTGGTTATCAAGGGTAGATTTGCGCCTAAAAATTTTGAAGGCATTCTGCGTAGATACATCAGAATGTGCAATTCATGTTTACGTTCTGATGCAGATGAATACGTCATATGCAATGGCTGCCGAAGTCCAGATACAATTCTTTCAAAGGAGAATCGGCTTTTCTTTCTGAGATGTGAGCAGTGTGGTTCGGGGAGGTCCGTAGCTCCAATCAAGGCTGGTTTTGTTGCACGAGTTGGGCGTCGGAAGGCTGGGACATGA

Network for GWHGAAZE005304

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01873.18	eIF-5_eIF-2B	138	258	8.90E-34

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03238	EIF2S2	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name
GO:0006413	biological_process	translational initiation
GO:0003743	molecular_function	translation initiation factor activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	61.845
	SRR3591706	second leaf	31.931
	SRR3591707	mature leaf	16.054
	SRR3591708	Shoot apex	56.241
	SRR3591709	Stem	38.020
	SRR3591710	White floral bud	34.529
	SRR3591711	White flower	38.065
	SRR3591712	Green floral bud	46.251
	SRR3591713	Yellow flower	32.421
SRP173429	SRR8316895	Juvenile bud stage	45.690
	SRR8316896	Juvenile bud stage	72.550
	SRR8316897	Juvenile bud stage	30.705
	SRR8316894	Third green stage	23.131
	SRR8316900	Third green stage	50.123
	SRR8316901	Third green stage	54.610
	SRR8316898	Complete white stage	12.411
	SRR8316899	Complete white stage	42.661
	SRR8316903	Complete white stage	22.150
	SRR8316902	Silver flowering stage	12.591
	SRR8316904	Silver flowering stage	19.056
	SRR8316905	Silver flowering stage	10.383
	SRR8316906	Gold flowering stage	32.420
	SRR8316907	Gold flowering stage	30.642
	SRR8316908	Gold flowering stage	32.256
SRP132670	SRR6706286	Control	27.256
	SRR6706287	Light intensity 50%	31.432
	SRR6706288	Light intensity 20%	35.812
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	62.991
	CNS0095593	Slightly white alabastrum(diploid) 2	59.258
	CNS0095594	Slightly white alabastrum(diploid) 3	71.749
	CNS0095595	Whole white alabastrum(diploid) 2	39.459
	CNS0095596	Whole white alabastrum(diploid) 3	40.904
	CNS0095597	Whole white alabastrum(diploid) 4	35.016
	CNS0095598	Silvery flower (diploied) 1	29.877
	CNS0095599	Silvery flower (diploied) 2	23.838
	CNS0095600	Silvery flower (diploied) 3	21.537
	CNS0095601	Golden flower (diploid) 1	21.054
	CNS0095602	Golden flower (diploid) 2	16.480
	CNS0095603	Golden flower (diploid) 3	19.153
	CNS0095604	Slightly white alabastrum(tetraploid) 1	39.944
	CNS0095605	Slightly white alabastrum(tetraploid) 2	40.567
	CNS0095606	Slightly white alabastrum(tetraploid) 3	46.535
	CNS0095607	Whole white alabastrum(tetraploid) 1	23.602
	CNS0095608	Whole white alabastrum(tetraploid) 2	22.307
	CNS0095609	Whole white alabastrum(tetraploid) 3	36.476
	CNS0095610	Silvery flower (tetraploid) 1	23.657
	CNS0095611	Silvery flower (tetraploid) 2	19.186
	CNS0095612	Silvery flower (tetraploid) 3	12.396
	CNS0095613	Golden flower (tetraploid) 1	17.357
	CNS0095614	Golden flower (tetraploid) 2	23.504
	CNS0095615	Golden flower (tetraploid) 3	10.526
CRA001975	CRR073297	Stem 1	33.987
	CRR073298	Stem 2	31.961
	CRR073299	Stem 3	25.656
	CRR073300	Leaf 1	27.739
	CRR073301	Leaf 2	30.988
	CRR073302	Leaf 3	17.283
	CRR073303	Juvenile bud 1	21.068
	CRR073304	Juvenile bud 2	12.303
	CRR073305	Juvenile bud 3	19.494
	CRR073306	Third green 1	5.214
	CRR073307	Third green 2	7.480
	CRR073308	Third green 3	5.393
	CRR073309	Second white 1	6.375
	CRR073310	Second white 2	8.138
	CRR073311	Second white 3	6.734
	CRR073312	Silver flowering 1	8.732
	CRR073313	Silver flowering 2	6.476
	CRR073314	Silver flowering 3	7.689
	CRR073315	Gold flowering 1	11.725
	CRR073316	Gold flowering 2	11.047
	CRR073317	Gold flowering 3	4.986
	CRR073318	Tawny withering 1	29.689
	CRR073319	Tawny withering 2	25.743
	CRR073320	Tawny withering 3	36.264