Detail information of GWHGAAZE005305


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002323680.20hypothetical protein POPTR_0016s14550g [Populus trichocarpa]
Swissprottr|Q9LZV3|MAN6_ARATH0Mannan endo-1,4-beta-mannosidase 6 (Precursor)
trEMBLtr|B9IGV3|B9IGV3_POPTR0Uncharacterized protein {ECO:0000313|EMBL:EEF05441.2}
TAIR10AT5G01930.10Glycosyl hydrolase superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene57992565801688+
GWHAAZE00000002mRNA57992565801688+
GWHAAZE00000002exon57992565799386+
GWHAAZE00000002exon57994675799746+
GWHAAZE00000002exon57998575800045+
GWHAAZE00000002exon58001475800269+
GWHAAZE00000002exon58003635800574+
GWHAAZE00000002exon58012565801688+
GWHAAZE00000002CDS57992565799386+
GWHAAZE00000002CDS57994675799746+
GWHAAZE00000002CDS57998575800045+
GWHAAZE00000002CDS58001475800269+
GWHAAZE00000002CDS58003635800574+
GWHAAZE00000002CDS58012565801688+
Transcript Sequence

Network for GWHGAAZE005305

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00150.19Cellulase693561.10E-16
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K19355MAN Metabolic pathways map01100
Fructose and mannose metabolismmap00051

Gene Ontology

GO term OntologyName
GO:0005975biological_processcarbohydrate metabolic process
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf25.105
SRR3591706second leaf15.365
SRR3591707mature leaf8.177
SRR3591708Shoot apex14.192
SRR3591709Stem88.273
SRR3591710White floral bud23.773
SRR3591711White flower23.808
SRR3591712Green floral bud27.245
SRR3591713Yellow flower24.129
SRP173429 SRR8316895Juvenile bud stage 80.299
SRR8316896Juvenile bud stage 40.129
SRR8316897Juvenile bud stage 17.388
SRR8316894Third green stage 9.433
SRR8316900Third green stage 24.989
SRR8316901Third green stage 24.192
SRR8316898Complete white stage 9.658
SRR8316899Complete white stage 28.443
SRR8316903Complete white stage 15.609
SRR8316902Silver flowering stage10.058
SRR8316904Silver flowering stage13.600
SRR8316905Silver flowering stage6.388
SRR8316906Gold flowering stage 23.862
SRR8316907Gold flowering stage 22.475
SRR8316908Gold flowering stage 16.660
SRP132670SRR6706286Control30.656
SRR6706287Light intensity 50%29.002
SRR6706288Light intensity 20%32.939
CNP0000432CNS0095592Slightly white alabastrum(diploid) 119.218
CNS0095593Slightly white alabastrum(diploid) 217.894
CNS0095594Slightly white alabastrum(diploid) 323.870
CNS0095595Whole white alabastrum(diploid) 216.101
CNS0095596Whole white alabastrum(diploid) 317.551
CNS0095597Whole white alabastrum(diploid) 418.389
CNS0095598Silvery flower (diploied) 124.163
CNS0095599Silvery flower (diploied) 218.415
CNS0095600Silvery flower (diploied) 334.475
CNS0095601Golden flower (diploid) 124.375
CNS0095602Golden flower (diploid) 237.020
CNS0095603Golden flower (diploid) 333.609
CNS0095604Slightly white alabastrum(tetraploid) 115.660
CNS0095605Slightly white alabastrum(tetraploid) 212.262
CNS0095606Slightly white alabastrum(tetraploid) 353.761
CNS0095607Whole white alabastrum(tetraploid) 114.751
CNS0095608Whole white alabastrum(tetraploid) 217.515
CNS0095609Whole white alabastrum(tetraploid) 331.532
CNS0095610Silvery flower (tetraploid) 141.799
CNS0095611Silvery flower (tetraploid) 242.119
CNS0095612Silvery flower (tetraploid) 333.287
CNS0095613Golden flower (tetraploid) 140.691
CNS0095614Golden flower (tetraploid) 245.576
CNS0095615Golden flower (tetraploid) 357.657
CRA001975CRR073297Stem 1122.377
CRR073298Stem 246.981
CRR073299Stem 3187.675
CRR073300Leaf 121.263
CRR073301Leaf 216.151
CRR073302Leaf 319.333
CRR073303Juvenile bud 121.061
CRR073304Juvenile bud 217.912
CRR073305Juvenile bud 316.373
CRR073306Third green 113.534
CRR073307Third green 210.746
CRR073308Third green 311.158
CRR073309Second white 118.985
CRR073310Second white 220.520
CRR073311Second white 318.963
CRR073312Silver flowering 120.229
CRR073313Silver flowering 219.071
CRR073314Silver flowering 317.405
CRR073315Gold flowering 114.800
CRR073316Gold flowering 218.317
CRR073317Gold flowering 315.255
CRR073318Tawny withering 127.523
CRR073319Tawny withering 229.069
CRR073320Tawny withering 334.186