Gene detail

Detail information of GWHGAAZE005316

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002270753.1	0	PREDICTED: serine/threonine-protein kinase HT1 [Vitis vinifera]
Swissprot	tr\|Q2MHE4\|HT1_ARATH	4E-76	Serine/threonine-protein kinase HT1
trEMBL	tr\|A0A068UDW1\|A0A068UDW1_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_22 {ECO:0000313\|EMBL:CDP06394.1}
TAIR10	AT5G01850.1	4E-148	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	6005398	6010057	-
GWHAAZE00000002	mRNA	6005398	6010057	-
GWHAAZE00000002	exon	6009840	6010057	-
GWHAAZE00000002	exon	6009367	6009499	-
GWHAAZE00000002	exon	6009058	6009253	-
GWHAAZE00000002	exon	6008241	6008365	-
GWHAAZE00000002	exon	6006852	6007010	-
GWHAAZE00000002	exon	6005398	6005700	-
GWHAAZE00000002	CDS	6009840	6010057	-
GWHAAZE00000002	CDS	6009367	6009499	-
GWHAAZE00000002	CDS	6009058	6009253	-
GWHAAZE00000002	CDS	6008241	6008365	-
GWHAAZE00000002	CDS	6006852	6007010	-
GWHAAZE00000002	CDS	6005398	6005700	-

Transcript Sequence
>GWHTAAZE005322 ATGAGTTGCAGTGATAAGAACAGAAGAGGAGAAGAGGGGGAGTATGAGAAGCCCCATGCTAGGAAATCGGTGGAGAGGAACTCTAAGTCGGGCTCTGGTAATGGATCCATCACATCGTCACATTTAACTATCGACGAGAGAGTTCTGGTTGACCCCAAATTATTGTTTATCGGATCGAAAATTGGCGAGGGAGCTCATGGGAAAGTCTATGAAGGAAGGTGTGGGGATCATATAGTTGCCATAAAGGTTCTTAACCGTGGGAACAGTTCAGAAGAAAGAGCTGCACTTGAAAGTCGTTTTGCCCGGGAAGTTACTATGATGTCAAGAGTAAAACATGAGAATCTTGTGAAGTTTATTGGAGCTTGTAAAGATCCTTTAATGGTGATAGTTACAGAGCTTTTACCTGGGATGTCACTCCGTAAATATTTAGGCAGTATTCGTCCAAACCAATTAGACCTTCATGTTGTATTACGTTTTTCCCTTGACATTGCGCGAGCCATGGATTGTCTACATGCCAATGGGATTATACACAGAGATCTGAAACCAGACAATCTGTTGCTTACCGCCAATCAGAAGTCTGTGAAGCTTGCAGATTTTGGTCTAGCTAGGGAAGAATCTGTGACTGAGATGATGACTGCAGAAACTGGGACTTACCGTTGGATGGCGCCAGAGTTGTATAGCACGGTGACATTGCGCCAGGGTGAGAAGAAGCATTACAATAACAAGGTTGATGTTTACAGCTTTGGCTTTGTCTTATGGGAGTTACTGACGAACCGCATGCCATTTGAAGGCATGTCCAATTTGCAGGCTGCTTATGCTGCTGCTTTTAAGCAAGAGAGGCCAAGTATTCCAGAGGACATATCCCCGGATCTAGCATTCATCATACAATCATGTTGGGTGGAGGATCCAAACATGCGACCCAGCTTCAGCCAGATTATACGCATGCTCAATGAATTCCTCTTCACCCTCCCACCTCCGTCACCCTCCATACCTGAAGAACCTGAGACCGTTGACGATGCTGCTGCAGTGACAAGTAGTAACGGCACCATGAGTGTGTTGTCTGCACGCTCGAGAGGGAAATTTGCCTTTCTCCGCCAGCTTTTTGCTGCAAAGAAGACTAGGAACTCACAATGA

Network for GWHGAAZE005316

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	57	316	1.70E-59

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	TKL-Pl-4

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	26.681
	SRR3591706	second leaf	29.491
	SRR3591707	mature leaf	118.581
	SRR3591708	Shoot apex	30.484
	SRR3591709	Stem	50.225
	SRR3591710	White floral bud	44.183
	SRR3591711	White flower	67.417
	SRR3591712	Green floral bud	21.757
	SRR3591713	Yellow flower	33.685
SRP173429	SRR8316895	Juvenile bud stage	23.309
	SRR8316896	Juvenile bud stage	27.570
	SRR8316897	Juvenile bud stage	12.309
	SRR8316894	Third green stage	11.808
	SRR8316900	Third green stage	28.211
	SRR8316901	Third green stage	31.635
	SRR8316898	Complete white stage	16.183
	SRR8316899	Complete white stage	67.236
	SRR8316903	Complete white stage	30.885
	SRR8316902	Silver flowering stage	18.120
	SRR8316904	Silver flowering stage	23.890
	SRR8316905	Silver flowering stage	10.886
	SRR8316906	Gold flowering stage	43.698
	SRR8316907	Gold flowering stage	39.373
	SRR8316908	Gold flowering stage	48.998
SRP132670	SRR6706286	Control	23.390
	SRR6706287	Light intensity 50%	22.053
	SRR6706288	Light intensity 20%	21.161
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	27.103
	CNS0095593	Slightly white alabastrum(diploid) 2	13.844
	CNS0095594	Slightly white alabastrum(diploid) 3	18.739
	CNS0095595	Whole white alabastrum(diploid) 2	20.290
	CNS0095596	Whole white alabastrum(diploid) 3	17.680
	CNS0095597	Whole white alabastrum(diploid) 4	18.113
	CNS0095598	Silvery flower (diploied) 1	42.752
	CNS0095599	Silvery flower (diploied) 2	33.943
	CNS0095600	Silvery flower (diploied) 3	43.250
	CNS0095601	Golden flower (diploid) 1	42.525
	CNS0095602	Golden flower (diploid) 2	43.929
	CNS0095603	Golden flower (diploid) 3	44.312
	CNS0095604	Slightly white alabastrum(tetraploid) 1	19.887
	CNS0095605	Slightly white alabastrum(tetraploid) 2	18.382
	CNS0095606	Slightly white alabastrum(tetraploid) 3	28.643
	CNS0095607	Whole white alabastrum(tetraploid) 1	19.168
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.020
	CNS0095609	Whole white alabastrum(tetraploid) 3	17.767
	CNS0095610	Silvery flower (tetraploid) 1	40.370
	CNS0095611	Silvery flower (tetraploid) 2	31.905
	CNS0095612	Silvery flower (tetraploid) 3	11.582
	CNS0095613	Golden flower (tetraploid) 1	19.279
	CNS0095614	Golden flower (tetraploid) 2	29.275
	CNS0095615	Golden flower (tetraploid) 3	18.358
CRA001975	CRR073297	Stem 1	23.990
	CRR073298	Stem 2	24.118
	CRR073299	Stem 3	19.405
	CRR073300	Leaf 1	25.664
	CRR073301	Leaf 2	20.997
	CRR073302	Leaf 3	14.629
	CRR073303	Juvenile bud 1	15.499
	CRR073304	Juvenile bud 2	11.643
	CRR073305	Juvenile bud 3	16.466
	CRR073306	Third green 1	8.943
	CRR073307	Third green 2	8.327
	CRR073308	Third green 3	11.321
	CRR073309	Second white 1	7.849
	CRR073310	Second white 2	13.937
	CRR073311	Second white 3	7.871
	CRR073312	Silver flowering 1	5.944
	CRR073313	Silver flowering 2	3.508
	CRR073314	Silver flowering 3	2.809
	CRR073315	Gold flowering 1	13.276
	CRR073316	Gold flowering 2	17.249
	CRR073317	Gold flowering 3	8.049
	CRR073318	Tawny withering 1	21.417
	CRR073319	Tawny withering 2	18.802
	CRR073320	Tawny withering 3	15.601