Gene detail

Detail information of GWHGAAZE005334

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011095102.1	PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial [Sesamum indicum]
Swissprot	tr\|Q9SR86\|AGT23_ARATH	Alanine--glyoxylate aminotransferase 2 homolog 3, mitochondrial (Precursor)
trEMBL	tr\|B9SZ94\|B9SZ94_RICCO	Alanine-glyoxylate aminotransferase, putative {ECO:0000313\|EMBL:EEF31063.1}
TAIR10	AT3G08860.1	PYRIMIDINE 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	6329862	6334416	+
GWHAAZE00000002	mRNA	6329862	6334416	+
GWHAAZE00000002	exon	6329862	6330101	+
GWHAAZE00000002	exon	6331563	6331782	+
GWHAAZE00000002	exon	6331925	6332064	+
GWHAAZE00000002	exon	6332978	6333121	+
GWHAAZE00000002	exon	6333219	6333398	+
GWHAAZE00000002	exon	6333649	6333874	+
GWHAAZE00000002	exon	6333958	6334071	+
GWHAAZE00000002	exon	6334165	6334251	+
GWHAAZE00000002	exon	6334373	6334416	+
GWHAAZE00000002	CDS	6329862	6330101	+
GWHAAZE00000002	CDS	6331563	6331782	+
GWHAAZE00000002	CDS	6331925	6332064	+
GWHAAZE00000002	CDS	6332978	6333121	+
GWHAAZE00000002	CDS	6333219	6333398	+
GWHAAZE00000002	CDS	6333649	6333874	+
GWHAAZE00000002	CDS	6333958	6334071	+
GWHAAZE00000002	CDS	6334165	6334251	+
GWHAAZE00000002	CDS	6334373	6334416	+

Transcript Sequence
>GWHTAAZE005340 ATGATGATGATGATGAAAAGGGCAATCTCGAGAAGAGAAACTCAATGTTTGCGTCGATTCTTCTCTCCTCTTGCCCAAACGGAGGAGTCTTCTTCTCTATCGGAAAGTGACGTCTTTATTCCTAAAATGCCGCCCTTCGACTACTCTCCTCCACCGTACACCGGCCCCACCGCCGACCAGATCTTGCGCAAGCGAAACGAGTTTCTCAGTCCTTCCATGTTCTACTTCTACAATAAACCCGTGAACGTGGTACATGGCAAGAAGCAGTATCTATTTGACGAGCATGGGCGCAGATACCTTGACGCATTTGGAGGGATCGCCACTGTGTGTTGCGGGCACGGCCATCCCGATGTGGTCGAGGCAATTGTCACCCAAATGAACCGTTTACAACACTCCACCATTCTGTATCTAAATCACGCCATCGCTGATTTTGCCGAAGCACTAGCCTCCAAGTTGCCCGCGAATGAGCTAGCGATGATGATCGCACGTTTGTACACTGGTTGTCAAGATATTGTGTCACTGAGGAATGCGTACCATGGGAATGCAGCTGGGACCATGGGTGCAACTGCACAGTCTAACTGGAAATTTAATGTTGTGCAGAGTGGAGTCCATCATGCCCTGAATCCGGACCCATACAGAGGAGTCTTTGGTTCGGATGGAGAAAAGTATGCAAAAGATGTTCAAGATCTCATTCAATATGGAACTTCGGGTCATGTTGCTGGTTTTATTTTTGAAGCTATACAAGGAGTAGGTGGAATCGTTGAATTGGCTCCTGGTTATTTGCCTCCAGTGTTTAACAGTATTAAGAAAGCTGGAGGCCTTTGTATTGCTGATGAGGTTCAGTGTGGATTTGCTCGGACTGGAAGCCATTTTTGGGGATTCCAGTCTCAGGGTGTTGTGCCCGATATAGTCACAATGGCAAAGGGCATTGGAAATGGGATTCCCCTTGGTGCTGTGGTAACTACTCCAGAGATAGCAGAGGTATTGACTCGTCGTAGTTACTTCAATACCTTTGGAGGAAACCCCGTATGTACTGCTGCAGGCCACGCCGTTCTCAAAGTGATAGAGAGAGAGAATCTTCAAGAGAATGCGCATATTGTGGGTTCCTATTTGAAAGAGCGTCTCATTGCCCTCAAGGATAAACACGAAATTATTGGGGATGTGAGAGGAAGAGGATTGATGCAAGGAGTTGAACTTGTGACGGACCAACAATTGAAAACACCTGCCAAGGTTGAAATTCTGCATGTGATGGACCAAATGAAAGATATGGGGGTATTGATAGGCAAAGGCGGATTTTTTGGGAATGTTTTCAGAATTACACCTCCTCTCTGCTTCACTAAGGAAGATGCAGACTATCTTGTGGATGTGATGGACCTTGCAATGTCAAAGATATGA

Network for GWHGAAZE005334

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00202.22	Aminotran_3	80	459	5.00E-83

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00827	AGXT2	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Alanine, aspartate and glutamate metabolism	map00250
		Glycine, serine and threonine metabolism	map00260
		Cysteine and methionine metabolism	map00270
		Valine, leucine and isoleucine degradation	map00280

Gene Ontology

GO term	Ontology	Name
GO:0008483	molecular_function	transaminase activity
GO:0030170	molecular_function	pyridoxal phosphate binding
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	96.752
	SRR3591706	second leaf	17.576
	SRR3591707	mature leaf	35.753
	SRR3591708	Shoot apex	23.666
	SRR3591709	Stem	314.593
	SRR3591710	White floral bud	42.963
	SRR3591711	White flower	41.723
	SRR3591712	Green floral bud	62.075
	SRR3591713	Yellow flower	24.231
SRP173429	SRR8316895	Juvenile bud stage	31.926
	SRR8316896	Juvenile bud stage	64.051
	SRR8316897	Juvenile bud stage	28.895
	SRR8316894	Third green stage	31.954
	SRR8316900	Third green stage	118.242
	SRR8316901	Third green stage	98.302
	SRR8316898	Complete white stage	28.134
	SRR8316899	Complete white stage	89.376
	SRR8316903	Complete white stage	40.319
	SRR8316902	Silver flowering stage	25.830
	SRR8316904	Silver flowering stage	40.236
	SRR8316905	Silver flowering stage	11.178
	SRR8316906	Gold flowering stage	17.544
	SRR8316907	Gold flowering stage	61.049
	SRR8316908	Gold flowering stage	34.368
SRP132670	SRR6706286	Control	74.392
	SRR6706287	Light intensity 50%	87.767
	SRR6706288	Light intensity 20%	82.447
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	45.756
	CNS0095593	Slightly white alabastrum(diploid) 2	43.837
	CNS0095594	Slightly white alabastrum(diploid) 3	59.553
	CNS0095595	Whole white alabastrum(diploid) 2	46.955
	CNS0095596	Whole white alabastrum(diploid) 3	60.098
	CNS0095597	Whole white alabastrum(diploid) 4	65.635
	CNS0095598	Silvery flower (diploied) 1	18.132
	CNS0095599	Silvery flower (diploied) 2	16.642
	CNS0095600	Silvery flower (diploied) 3	47.728
	CNS0095601	Golden flower (diploid) 1	17.873
	CNS0095602	Golden flower (diploid) 2	43.208
	CNS0095603	Golden flower (diploid) 3	41.596
	CNS0095604	Slightly white alabastrum(tetraploid) 1	55.144
	CNS0095605	Slightly white alabastrum(tetraploid) 2	62.543
	CNS0095606	Slightly white alabastrum(tetraploid) 3	33.001
	CNS0095607	Whole white alabastrum(tetraploid) 1	78.771
	CNS0095608	Whole white alabastrum(tetraploid) 2	75.930
	CNS0095609	Whole white alabastrum(tetraploid) 3	76.534
	CNS0095610	Silvery flower (tetraploid) 1	74.419
	CNS0095611	Silvery flower (tetraploid) 2	24.688
	CNS0095612	Silvery flower (tetraploid) 3	16.985
	CNS0095613	Golden flower (tetraploid) 1	7.760
	CNS0095614	Golden flower (tetraploid) 2	18.985
	CNS0095615	Golden flower (tetraploid) 3	5.597
CRA001975	CRR073297	Stem 1	47.286
	CRR073298	Stem 2	58.037
	CRR073299	Stem 3	55.178
	CRR073300	Leaf 1	107.932
	CRR073301	Leaf 2	76.730
	CRR073302	Leaf 3	83.710
	CRR073303	Juvenile bud 1	68.057
	CRR073304	Juvenile bud 2	78.778
	CRR073305	Juvenile bud 3	68.824
	CRR073306	Third green 1	57.068
	CRR073307	Third green 2	52.882
	CRR073308	Third green 3	69.248
	CRR073309	Second white 1	18.692
	CRR073310	Second white 2	13.222
	CRR073311	Second white 3	11.969
	CRR073312	Silver flowering 1	17.702
	CRR073313	Silver flowering 2	29.529
	CRR073314	Silver flowering 3	12.463
	CRR073315	Gold flowering 1	40.124
	CRR073316	Gold flowering 2	31.387
	CRR073317	Gold flowering 3	40.759
	CRR073318	Tawny withering 1	106.432
	CRR073319	Tawny withering 2	74.962
	CRR073320	Tawny withering 3	104.902