Gene detail

Detail information of GWHGAAZE005345

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	EYU35231.1	1.3824E-163	hypothetical protein MIMGU_mgv1a011203mg [Erythranthe guttata]
Swissprot	tr\|P93798\|SNAA_VITVI	3E-149	Alpha-soluble NSF attachment protein
trEMBL	tr\|A0A022R4P1\|A0A022R4P1_ERYGU	5E-164	Uncharacterized protein {ECO:0000313\|EMBL:EYU35231.1}
TAIR10	AT3G56190.1	4E-104	alpha-soluble NSF attachment protein 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	6446446	6451391	+
GWHAAZE00000002	mRNA	6446446	6451391	+
GWHAAZE00000002	exon	6446446	6446590	+
GWHAAZE00000002	exon	6447131	6447180	+
GWHAAZE00000002	exon	6447261	6447333	+
GWHAAZE00000002	exon	6447584	6447663	+
GWHAAZE00000002	exon	6447951	6448102	+
GWHAAZE00000002	exon	6448329	6448488	+
GWHAAZE00000002	exon	6448572	6448619	+
GWHAAZE00000002	exon	6449375	6449455	+
GWHAAZE00000002	exon	6451311	6451391	+
GWHAAZE00000002	CDS	6446446	6446590	+
GWHAAZE00000002	CDS	6447131	6447180	+
GWHAAZE00000002	CDS	6447261	6447333	+
GWHAAZE00000002	CDS	6447584	6447663	+
GWHAAZE00000002	CDS	6447951	6448102	+
GWHAAZE00000002	CDS	6448329	6448488	+
GWHAAZE00000002	CDS	6448572	6448619	+
GWHAAZE00000002	CDS	6449375	6449455	+
GWHAAZE00000002	CDS	6451311	6451391	+

Transcript Sequence
>GWHTAAZE005351 ATGGGGGATCAGGTAGCGAGAGCAGAAGAATTCGAGAAAAAAGCGGATAAGAAGATCGGCGGCTGGGGTCTTTTCGGCTCTAAATTCGAGGACGCGTCTGATTTCTACCAAAAGGCTGCTAATTCCTTCAAACTCGCCAAATCATGGGATAGAGCTGGTTCAGTCAACATCAAATTAGCTGATTGTTATTTAAAGTTGGATAGCAAGCATGAAGCTGCTAGTGCTTATGTAGACGCTGCTAAATGCTATAAGAAGACATCCACTAAACAAGCTATAACATGTTTAGATCAAGCAGTAAATATGTTCGTGGCAATTGGCAGACTGAACATGGCTGGTAGATATTGCAAGGAAATTGGTGACTTATACGAGCAGGAGAAAAACATTGAGAAGGCTATTGTATACTTCGAGCGGTCTGCCGACCTTTTCCAAAGTGAAGAAGCAACAACTTCTGCAAATCAGTGCAATCAAAAAGTTGCGCAATTTTCAGCTCAGCTAGGAGATTATCCAAAGGCAATTGCAATTTATGAAGATATAGCACGACAGTCCCTGAACAATAATTTATTGAAGTATGGGGTTAGAGGACATCTTCTTAATGCTGGACTTTGTCAACTATGCAAAGGTGATGTTGTTGCAATAACAAATGCACTAGAGCGTTATCAGGACTTGGACCCAACCTTTTCGAGAACACGGGAGTGCAAATTTTTAGCTGATTTGGCCTGTGCAATTGATGAGGAAGATGTTGCTAAATTCACTGAGGTTGTCAAGGAATTTGATAGCATGACCCGTCTGGATGCTTGGAAGACTACGCTTCTCTTGAAAGTGAAGGAAGCTTTGAAGGAGAAAGAACTCGAGGAAGATGATCTCACTTGA

Network for GWHGAAZE005345

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14938.7	SNAP	7	278	2.40E-109

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15296	NAPA, SNAPA, SEC17	Autophagy - yeast	map04138
K15296	NAPA, SNAPA, SEC17	Synaptic vesicle cycle	map04721

Gene Ontology

GO term	Ontology	Name
GO:0006886	biological_process	intracellular protein transport
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	25.261
	SRR3591706	second leaf	11.116
	SRR3591707	mature leaf	17.797
	SRR3591708	Shoot apex	12.531
	SRR3591709	Stem	31.722
	SRR3591710	White floral bud	14.323
	SRR3591711	White flower	25.006
	SRR3591712	Green floral bud	17.549
	SRR3591713	Yellow flower	28.703
SRP173429	SRR8316895	Juvenile bud stage	16.054
	SRR8316896	Juvenile bud stage	24.309
	SRR8316897	Juvenile bud stage	16.580
	SRR8316894	Third green stage	8.150
	SRR8316900	Third green stage	23.932
	SRR8316901	Third green stage	24.638
	SRR8316898	Complete white stage	12.458
	SRR8316899	Complete white stage	34.874
	SRR8316903	Complete white stage	18.210
	SRR8316902	Silver flowering stage	15.533
	SRR8316904	Silver flowering stage	17.002
	SRR8316905	Silver flowering stage	7.724
	SRR8316906	Gold flowering stage	32.921
	SRR8316907	Gold flowering stage	25.414
	SRR8316908	Gold flowering stage	41.054
SRP132670	SRR6706286	Control	11.115
	SRR6706287	Light intensity 50%	12.716
	SRR6706288	Light intensity 20%	12.776
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	17.809
	CNS0095593	Slightly white alabastrum(diploid) 2	20.052
	CNS0095594	Slightly white alabastrum(diploid) 3	19.106
	CNS0095595	Whole white alabastrum(diploid) 2	15.720
	CNS0095596	Whole white alabastrum(diploid) 3	14.022
	CNS0095597	Whole white alabastrum(diploid) 4	17.586
	CNS0095598	Silvery flower (diploied) 1	23.549
	CNS0095599	Silvery flower (diploied) 2	24.290
	CNS0095600	Silvery flower (diploied) 3	23.039
	CNS0095601	Golden flower (diploid) 1	23.882
	CNS0095602	Golden flower (diploid) 2	24.263
	CNS0095603	Golden flower (diploid) 3	22.478
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.768
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.447
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.805
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.531
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.140
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.553
	CNS0095610	Silvery flower (tetraploid) 1	23.160
	CNS0095611	Silvery flower (tetraploid) 2	22.090
	CNS0095612	Silvery flower (tetraploid) 3	17.846
	CNS0095613	Golden flower (tetraploid) 1	13.480
	CNS0095614	Golden flower (tetraploid) 2	17.199
	CNS0095615	Golden flower (tetraploid) 3	18.931
CRA001975	CRR073297	Stem 1	15.632
	CRR073298	Stem 2	13.521
	CRR073299	Stem 3	9.693
	CRR073300	Leaf 1	13.390
	CRR073301	Leaf 2	10.617
	CRR073302	Leaf 3	11.747
	CRR073303	Juvenile bud 1	10.266
	CRR073304	Juvenile bud 2	11.611
	CRR073305	Juvenile bud 3	13.298
	CRR073306	Third green 1	10.174
	CRR073307	Third green 2	10.495
	CRR073308	Third green 3	9.087
	CRR073309	Second white 1	5.816
	CRR073310	Second white 2	7.300
	CRR073311	Second white 3	7.177
	CRR073312	Silver flowering 1	6.698
	CRR073313	Silver flowering 2	4.168
	CRR073314	Silver flowering 3	3.909
	CRR073315	Gold flowering 1	16.045
	CRR073316	Gold flowering 2	19.744
	CRR073317	Gold flowering 3	12.303
	CRR073318	Tawny withering 1	17.785
	CRR073319	Tawny withering 2	19.563
	CRR073320	Tawny withering 3	16.822