Detail information of GWHGAAZE005364


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010505459.18.0889E-109PREDICTED: PRA1 family protein B4 [Camelina sativa]
Swissprottr|O80915|PR1B4_ARATH1E-107PRA1 family protein B4
trEMBLtr|V4MBL2|V4MBL2_EUTSA2E-107Uncharacterized protein {ECO:0000313|EMBL:ESQ52502.1}
TAIR10AT2G38360.18E-78prenylated RAB acceptor 1.B4

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene67402576740928+
GWHAAZE00000002mRNA67402576740928+
GWHAAZE00000002exon67402576740928+
GWHAAZE00000002CDS67402576740928+
Transcript Sequence

Network for GWHGAAZE005364

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0200


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03208.20PRA1501927.50E-48
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf425.753
SRR3591706second leaf131.973
SRR3591707mature leaf73.527
SRR3591708Shoot apex210.662
SRR3591709Stem300.276
SRR3591710White floral bud230.368
SRR3591711White flower186.937
SRR3591712Green floral bud269.272
SRR3591713Yellow flower119.301
SRP173429 SRR8316895Juvenile bud stage 190.445
SRR8316896Juvenile bud stage 239.039
SRR8316897Juvenile bud stage 132.006
SRR8316894Third green stage 80.174
SRR8316900Third green stage 197.181
SRR8316901Third green stage 273.609
SRR8316898Complete white stage 78.899
SRR8316899Complete white stage 301.922
SRR8316903Complete white stage 161.650
SRR8316902Silver flowering stage76.807
SRR8316904Silver flowering stage84.891
SRR8316905Silver flowering stage58.190
SRR8316906Gold flowering stage 127.368
SRR8316907Gold flowering stage 157.007
SRR8316908Gold flowering stage 171.286
SRP132670SRR6706286Control170.503
SRR6706287Light intensity 50%184.165
SRR6706288Light intensity 20%172.458
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1201.575
CNS0095593Slightly white alabastrum(diploid) 2236.278
CNS0095594Slightly white alabastrum(diploid) 3192.212
CNS0095595Whole white alabastrum(diploid) 2147.300
CNS0095596Whole white alabastrum(diploid) 3124.095
CNS0095597Whole white alabastrum(diploid) 4143.161
CNS0095598Silvery flower (diploied) 1150.056
CNS0095599Silvery flower (diploied) 2138.427
CNS0095600Silvery flower (diploied) 3197.463
CNS0095601Golden flower (diploid) 1157.922
CNS0095602Golden flower (diploid) 2223.343
CNS0095603Golden flower (diploid) 3207.676
CNS0095604Slightly white alabastrum(tetraploid) 1169.467
CNS0095605Slightly white alabastrum(tetraploid) 2154.233
CNS0095606Slightly white alabastrum(tetraploid) 3189.717
CNS0095607Whole white alabastrum(tetraploid) 1136.900
CNS0095608Whole white alabastrum(tetraploid) 2115.625
CNS0095609Whole white alabastrum(tetraploid) 3139.402
CNS0095610Silvery flower (tetraploid) 1118.552
CNS0095611Silvery flower (tetraploid) 2131.421
CNS0095612Silvery flower (tetraploid) 3181.753
CNS0095613Golden flower (tetraploid) 1100.616
CNS0095614Golden flower (tetraploid) 2108.953
CNS0095615Golden flower (tetraploid) 3168.140
CRA001975CRR073297Stem 1278.951
CRR073298Stem 2272.567
CRR073299Stem 3367.857
CRR073300Leaf 1370.788
CRR073301Leaf 2446.771
CRR073302Leaf 3401.711
CRR073303Juvenile bud 1409.461
CRR073304Juvenile bud 2541.522
CRR073305Juvenile bud 3636.288
CRR073306Third green 1428.600
CRR073307Third green 2463.888
CRR073308Third green 3439.358
CRR073309Second white 1365.894
CRR073310Second white 2207.535
CRR073311Second white 3217.010
CRR073312Silver flowering 1321.002
CRR073313Silver flowering 2417.935
CRR073314Silver flowering 3283.513
CRR073315Gold flowering 1190.921
CRR073316Gold flowering 2254.987
CRR073317Gold flowering 3258.499
CRR073318Tawny withering 1504.225
CRR073319Tawny withering 2502.471
CRR073320Tawny withering 3526.621