Gene detail

Detail information of GWHGAAZE005379

Functional Annotation

Database	Orthologs	Annotation
Nr	AEK86562.1	ubiquitin activating enzyme E1 [Camellia sinensis]
Swissprot	tr\|P93028\|UBE11_ARATH	Ubiquitin-activating enzyme E1 1
trEMBL	tr\|G1FER0\|G1FER0_CAMSI	Ubiquitin activating enzyme E1 {ECO:0000313\|EMBL:AEK86562.1}
TAIR10	AT2G30110.1	ubiquitin-activating enzyme 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	6922613	6928003	+
GWHAAZE00000002	mRNA	6922613	6928003	+
GWHAAZE00000002	exon	6922613	6922813	+
GWHAAZE00000002	exon	6922894	6922981	+
GWHAAZE00000002	exon	6923271	6923503	+
GWHAAZE00000002	exon	6924169	6924963	+
GWHAAZE00000002	exon	6925372	6926240	+
GWHAAZE00000002	exon	6926346	6926778	+
GWHAAZE00000002	exon	6927407	6928003	+
GWHAAZE00000002	CDS	6922613	6922813	+
GWHAAZE00000002	CDS	6922894	6922981	+
GWHAAZE00000002	CDS	6923271	6923503	+
GWHAAZE00000002	CDS	6924169	6924963	+
GWHAAZE00000002	CDS	6925372	6926240	+
GWHAAZE00000002	CDS	6926346	6926778	+
GWHAAZE00000002	CDS	6927407	6928003	+

Transcript Sequence
>GWHTAAZE005385 ATGCTTCCGGGAAAGAGAGCTGTTGAGGGAGAGGTAGTAGTGGACGCTGAAGAAGGTAACTGCTCAACTGGATCCTTGTCTAAGAAGCGTAAGATTGATTGCTTGGTCTCATCGGCAACGGAAACCATCACCACCGGGACGGTATCAAGTGTGAAGATGGGAGGAATGTTAACGGCAACACCAGTAACAGCGCCGATAACGCTCGCTGTGTACGGCCGCGAGACGATGAGAAGGCTATTTGCCTCCAACATCCTTGTCTCGGGGATGCAAGGCCTTGGTGCCGAAGTTGCGAAGAATCTTGCTCTTGCTGGTGTGAAGTCTGTGACCTTGCACGACGAGGGAAAGGTGGAGTTGTGGGATTTATCTAGCAATTTCATTTTCTCTGAGGATGATGTTGGGAAGAATCGGGCTCTTGCTTCTGTCCAGAAGTTGCAAGAACTAAACAATGCGGTGGTCATTTCTACTTTAACAACTGAATTAAAAAAGGAACATCTTTCTGATTTTCAGGCAAGTGTTTTACCGGTCGTAGTATTCACTGATATCAGTTTAGAGAAGGCGATTGAATTTGATGATTTTTGCCATAAACATCAACCGCCAATTGCTTTCATCAAAGCTGATGTACGAGGCCTCTTTGGTAGTGTGTTCTGTGATTTCGGCCCTGAGTTCACAGTTTTTGATGTTGACGGCGAGGATTCACATACAGGTATTATTGCATCTATTAGCAATGACAACCCTGCTCTTGTAGCATGTGTTGATGATGAGAGGCTTGAGTTTCAAGATGGAGATCTAGTTGTTTTCTCTGAAGTACATGGAATGAAAGAACTGAGTGATGGAAAGCCAAGAAAGGTTAAAAATGCAAGGCCTTATTCATTCAGCATTGAAGAGGATACAACCAAGTATGGTGCATATGAGAAAGGTGGTATTGTCACACAAGTGAAGCAACCTAAGGTCTTGAACTTTAAGCCACTGAGTGAAGCAATTAAGGATCCTGGTGAGTTTCTTCTTAGTGATTTCTCCAAATTCGACCGGCCACCTCTCCTCCACCTGGCGTTTCAAGCATTGGACAAGTTCATTTCGGAGTTGGGACGCTTCCCTACTGCTGGGTCAGAGGATGATGCCGAGAAATTGATTTCTGTAGCCACTAACATTAACAATGGCTTGACCGATGGGAGAGTAGAAGAAATTGACCGTAAACTTCTTCGCAGCTTTGCATTTGGTGCTAGGGCTGTGTTAAACCCTATGGCTGCCATGTTTGGTGGCGTTGTTGGACAGGAAGTTGTTAAGGCTTGCTCGGGGAAGTTCCATCCACTTTTTCAGTTTTTCTATTTTGATTCTGTTGAGTCCCTTCCTACCGATCCCTTGGATACCAATGACTTTAAGCCTTTGAATAGTCGTTATGATGCCCAAATCTCGGTATTCGGATCTAAGCTACAGAAAAAGTTAGAGGATGCACAAGTTTTCATTGTGGGTTCTGGTGCACTAGGGTGTGAATTTCTCAAAAATGTAGCTCTTATGGGAGTCTCTTGTGGTAATAACGGCAAGCTAACAATCACAGACGATGACGTTATTGAGAAGAGCAACCTTAGCCGTCAGTTCCTTTTCCGTGACTGGAACATTGGGCAGGCCAAATCAACCGTTGCTGCCACAGCTGCTTTGTTGATCAATCCCCAGCTTCACATTGAAGCATTGCAAAATCGTGCAAGCCCTGAGTCTGAGAACGTTTTTGACGATACATTCTGGGAGAATTTGGATGTTGTCATCAATGCTCTGGATAATGTGAACGCGAGGCTCTACATTGATCAGAGGTGTTTGTACTTCCAGAAACCGCTTCTCGAGTCCGGAACCCTAGGTGCCAAGTGCAACACTCAGATGGTCATCCCTCACTTGACGGAAAATTACGGTGCCTCGAGGGACCCACCTGAGAAACAAGCACCCATGTGCACGGTGCACTCGTTCCCGCACAACATTGACCACTGTTTGACTTGGGCTCGATCGGAGTTCGAGGGTCTGCTTGAGAAGACACCAGCTGAAGTAAATGCCTATTTAATAAGCCCAAGTGAATATACTTCTGCCATGAGAAATGCTGGTGATGCACAAGCTAGGGACAATTTGGAACGTGTTATTGAATGCCTTGATAAAGAGAGATGCGAAACACTAGTAGACTGCATAACTTGGGCGAGGCTGAAGTTTGAGGACTACTTCGCTGACCGTGTGAAGCAGTTGACTTTTACGTTTCCCGAGGATGCAGTTACCAGTAGTGGCACACCATTTTGGTCTGCTCCAAAACGTTTTCCCCGGCCACTGCAGTTCTCGACTGAGGATCCGAGCCACCTTAACTTTGTGATGGCAGCATCGATATTAAGAGCAGAGACGTTTGGCATCCCAATTCCGGATTGGGTTAAGTCTCCAAAGAAGTTAGCTGAGGCTGTTGACAAAGTGATAGTCCCAGATTTCCAGCCCAAGAAAGATGTCAAGATTGTTACTGATGAGAAAGCCACTAATCTTTCTGCTGCATCTGTGGATGATGCTGCAGTCATCAATGAGCTTATCATGAAGTTAGAAATGTGCCAAAAGAAGCTGCCGCCAGGTTTCAAGATGAATCCAGTTCAGTTTGAGAAGGACGATGACACCAACTATCATATGGATGTAATAGCTGGACTAGCCAATATGAGGGCAAGAAACTACAGCATCCCTGAAGTTGATAAGCTTAAGGCCAAGTTCATTGCCGGGAGGATCATTCCCGCAATTGCAACCTCCACGGCCATGGCCACGGGTCTTGTTTGCCTAGAGCTATACAAGGTTCTAAATGGAGGTCACAAGGTGGAGGACTACCGCAACACCTTTGCCAACCTGGCACTCCCTTTATTCTCAATGGCCGAGCCGGTCCCGCCCAAGGTGATCAAGCACCAGGACTTGAACTGGACTGTGTGGGACCGGTGGATTCTGAAGGACAATCCGACTCTGAAGGATCTTCTTCAATGGCTTAAGAACAAAGGGCTCAACGCTTACAGTATCTCCTTGGGGAGTTGCTTGCTTTATAACAGCATGTTCCCAAGGCACAGAGATCGAATGGACAAGAAGATGGTGGATCTGGCGAGGGAAGTGGCAAAAGCAGAGCTACCTTCGTATCGAAGGCATTTTGATGTCGTGGTGGCTTGTGAGGACGATGAAGACAATGATATTGATATACCCCAGATTTCTATATATTTCAGGTAG

Network for GWHGAAZE005379

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00899.22	ThiF	68	444	2.30E-29
PF16190.6	E1_FCCH	243	314	8.10E-27
PF16191.6	E1_4HB	315	384	2.30E-23
PF00899.22	ThiF	466	965	1.20E-73
PF10585.10	UBA_e1_thiolCys	653	906	2.50E-83
PF09358.11	E1_UFD	977	1066	4.90E-21

Protein Sequence

>GWHPAAZE005382
MLPGKRAVEGEVVVDAEEGNCSTGSLSKKRKIDCLVSSATETITTGTVSSVKMGGMLTATPVTAPITLAVYGRETMRRLFASNILVSGMQGLGAEVAKNLALAGVKSVTLHDEGKVELWDLSSNFIFSEDDVGKNRALASVQKLQELNNAVVISTLTTELKKEHLSDFQASVLPVVVFTDISLEKAIEFDDFCHKHQPPIAFIKADVRGLFGSVFCDFGPEFTVFDVDGEDSHTGIIASISNDNPALVACVDDERLEFQDGDLVVFSEVHGMKELSDGKPRKVKNARPYSFSIEEDTTKYGAYEKGGIVTQVKQPKVLNFKPLSEAIKDPGEFLLSDFSKFDRPPLLHLAFQALDKFISELGRFPTAGSEDDAEKLISVATNINNGLTDGRVEEIDRKLLRSFAFGARAVLNPMAAMFGGVVGQEVVKACSGKFHPLFQFFYFDSVESLPTDPLDTNDFKPLNSRYDAQISVFGSKLQKKLEDAQVFIVGSGALGCEFLKNVALMGVSCGNNGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAATAALLINPQLHIEALQNRASPESENVFDDTFWENLDVVINALDNVNARLYIDQRCLYFQKPLLESGTLGAKCNTQMVIPHLTENYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEVNAYLISPSEYTSAMRNAGDAQARDNLERVIECLDKERCETLVDCITWARLKFEDYFADRVKQLTFTFPEDAVTSSGTPFWSAPKRFPRPLQFSTEDPSHLNFVMAASILRAETFGIPIPDWVKSPKKLAEAVDKVIVPDFQPKKDVKIVTDEKATNLSAASVDDAAVINELIMKLEMCQKKLPPGFKMNPVQFEKDDDTNYHMDVIAGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVLNGGHKVEDYRNTFANLALPLFSMAEPVPPKVIKHQDLNWTVWDRWILKDNPTLKDLLQWLKNKGLNAYSISLGSCLLYNSMFPRHRDRMDKKMVDLAREVAKAELPSYRRHFDVVVACEDDEDNDIDIPQISIYFR

Gene family

Gene family	subfamily
Ubiquitin Family	ThiF

KEGG pathway

KO	Enzyme	pathway	mapID
K03178	UBE1, UBA1	Ubiquitin mediated proteolysis	map04120

Gene Ontology

GO term	Ontology	Name
GO:0006464	biological_process	cellular protein modification process
GO:0008641	molecular_function	ubiquitin-like modifier activating enzyme activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	68.557
	SRR3591706	second leaf	34.998
	SRR3591707	mature leaf	39.151
	SRR3591708	Shoot apex	49.402
	SRR3591709	Stem	60.012
	SRR3591710	White floral bud	83.622
	SRR3591711	White flower	88.110
	SRR3591712	Green floral bud	78.090
	SRR3591713	Yellow flower	60.737
SRP173429	SRR8316895	Juvenile bud stage	44.701
	SRR8316896	Juvenile bud stage	65.782
	SRR8316897	Juvenile bud stage	28.334
	SRR8316894	Third green stage	26.539
	SRR8316900	Third green stage	79.280
	SRR8316901	Third green stage	71.316
	SRR8316898	Complete white stage	32.666
	SRR8316899	Complete white stage	96.253
	SRR8316903	Complete white stage	59.545
	SRR8316902	Silver flowering stage	32.835
	SRR8316904	Silver flowering stage	47.746
	SRR8316905	Silver flowering stage	19.321
	SRR8316906	Gold flowering stage	64.564
	SRR8316907	Gold flowering stage	61.131
	SRR8316908	Gold flowering stage	68.656
SRP132670	SRR6706286	Control	75.835
	SRR6706287	Light intensity 50%	82.804
	SRR6706288	Light intensity 20%	89.389
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	41.157
	CNS0095593	Slightly white alabastrum(diploid) 2	42.403
	CNS0095594	Slightly white alabastrum(diploid) 3	40.106
	CNS0095595	Whole white alabastrum(diploid) 2	39.901
	CNS0095596	Whole white alabastrum(diploid) 3	37.051
	CNS0095597	Whole white alabastrum(diploid) 4	38.066
	CNS0095598	Silvery flower (diploied) 1	49.346
	CNS0095599	Silvery flower (diploied) 2	47.659
	CNS0095600	Silvery flower (diploied) 3	118.576
	CNS0095601	Golden flower (diploid) 1	42.462
	CNS0095602	Golden flower (diploid) 2	105.965
	CNS0095603	Golden flower (diploid) 3	99.332
	CNS0095604	Slightly white alabastrum(tetraploid) 1	51.101
	CNS0095605	Slightly white alabastrum(tetraploid) 2	38.750
	CNS0095606	Slightly white alabastrum(tetraploid) 3	101.954
	CNS0095607	Whole white alabastrum(tetraploid) 1	34.194
	CNS0095608	Whole white alabastrum(tetraploid) 2	27.877
	CNS0095609	Whole white alabastrum(tetraploid) 3	81.227
	CNS0095610	Silvery flower (tetraploid) 1	111.202
	CNS0095611	Silvery flower (tetraploid) 2	111.474
	CNS0095612	Silvery flower (tetraploid) 3	91.118
	CNS0095613	Golden flower (tetraploid) 1	43.345
	CNS0095614	Golden flower (tetraploid) 2	76.434
	CNS0095615	Golden flower (tetraploid) 3	84.051
CRA001975	CRR073297	Stem 1	94.310
	CRR073298	Stem 2	90.607
	CRR073299	Stem 3	99.362
	CRR073300	Leaf 1	112.148
	CRR073301	Leaf 2	100.420
	CRR073302	Leaf 3	91.468
	CRR073303	Juvenile bud 1	112.721
	CRR073304	Juvenile bud 2	89.186
	CRR073305	Juvenile bud 3	152.537
	CRR073306	Third green 1	88.892
	CRR073307	Third green 2	58.432
	CRR073308	Third green 3	78.698
	CRR073309	Second white 1	88.848
	CRR073310	Second white 2	79.683
	CRR073311	Second white 3	83.551
	CRR073312	Silver flowering 1	90.327
	CRR073313	Silver flowering 2	110.281
	CRR073314	Silver flowering 3	88.010
	CRR073315	Gold flowering 1	47.748
	CRR073316	Gold flowering 2	65.870
	CRR073317	Gold flowering 3	63.329
	CRR073318	Tawny withering 1	70.147
	CRR073319	Tawny withering 2	58.301
	CRR073320	Tawny withering 3	69.631