Gene detail

Detail information of GWHGAAZE005380

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011095057.1	PREDICTED: importin subunit beta-1-like [Sesamum indicum]
Swissprot	tr\|Q9FJD4\|IMB1_ARATH	Importin subunit beta-1 {ECO:0000305}
trEMBL	tr\|A0A068UD75\|A0A068UD75_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_22 {ECO:0000313\|EMBL:CDP06446.1}
TAIR10	AT3G08947.1	ARM repeat superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	6950800	6953847	-
GWHAAZE00000002	mRNA	6950800	6953847	-
GWHAAZE00000002	exon	6950800	6951044	-
GWHAAZE00000002	exon	6951148	6951317	-
GWHAAZE00000002	exon	6951428	6953847	-
GWHAAZE00000002	CDS	6951428	6953847	-
GWHAAZE00000002	CDS	6951148	6951317	-
GWHAAZE00000002	CDS	6950800	6951044	-

Transcript Sequence
>GWHTAAZE005386 ATGGCCATGGAGATCACCCAATTTCTATTATCTGCTCAATCAGCGGATGCAAAAGTGCGGACTGAGGCAGAGGCCCACCTCAGGCAGTTCCAAGAGCAAAACCTACCTGGTTTTCTTTTATCCTTGTCGGTTGAACTCTCAAACGATGGCAAACCCGCCGAGTCCCGTAGACTGGCTGGTATTGTGCTTAAGAATTCATTGGACGCTAAAGATGCTGCTAGGAAGGAAAGTTTAGTTCAACAGTGGGTGGTAATTGACATATCATTCAAATCCCAAATTAAAGGGTTGCTCTTGAAGACCCTTGGATCTTCAGTGCAGGAGGCAAGGCACACTGCTGCCCAAGTAATTGCCAAAATTGCCTCAATTGAAATTCCCCGAAAGGAGTGGCCTGACCTCATTGGATCATTGCTTGTCTATATGACTCAGCAGGATAAGCCTGCATCATTGAAACAGGCAACCCTGGAAACACTTGGGTATGTGTGTGAAGAGATATCCCACCGCGATCTTGTGCAAGACGAGGTGAATTCTGTCCTCACTGCAGTAGTTCAAGGAATGAATGCGGCTGAGCAAAGCAGTGAAGTTCGTCTTGCGGCAACCAGGGCTCTATACAATGCCCTTGATTTTGCCCAGACCAACTTTGAGAATGAGATGGAACGGGGTTACATTATGAAGATGGTTTGCGAGACAGCCATGGCCAAAGAGCCAGAGATTAGACAGTCTGCTTTCGAGTGTCTTGTTTCCATTGCATCAACATACTATGATGTGCTTGAACCTTACATGCAAACTATCTTTGAGCTCACAGCAAGTGCAGTTAGAGGAGATGAAGAAGGTGTTGCCCTTCAAGCAATTGAGATCTGGAGTTCTATCTGCGATGAAGAGATAGAACTTCAGGACTTCGAGGTTCCTGAGAGTGGGGATTCTGATGCTCCTCACTCCCGATTTGTTGAGAAGGCTTTGCCATCATTAGTTCCTATGTTGCTGGAAACTCTACTGAAGCAAGATGAGGATCAGGACCAGGATGATGTGACTTGGAATCTGTCCATGGCTGGTGGCACATGTCTTTGCCTTGTTGCTAGAACAGTTGGGGATGCCATTGTGCCCCATGTAATGCCATTTGTGGAAGCAAACATATTGAAGCCTGATTGGCGATCTCGTGATGCAGCTACATACGCGTTTGGTTCTATAATCGAAGGCCCGAGCACTGAGAAGCTCTCCCCTATGGTCCATGCAGGTTTTGATTTTCTGCTTAACGCAATGAAGGATGAAAACACCCACGTGAAAGTCACAACTGCATGGACTCTTAGTCGTATTTTCGAGTTATTGCATACTCCGTCTACCGGATTTTCTGTGATATCTCCTGCCAACATCCAAAGGGTTGTAGGTGTTCTGTTGGATGGAATAAAAGATGCCCCCCACGTAGCTGAGAAGGTTTGTGGGGCTATCTATTACCTTGCCCAAGGGTACGAGGATGCTGGAACAACCTCCTCTATGCTCACACCTTACCTCCCCAACATTATATCATGTATAATTGAAACTGCTGATCGAACAGATGGCAGTGATTCAAAGCTTAGGTCTTCTTCTTACGAGACCTTGAATGAGGTGATTCGATGTTCAGTTCTTACTGAAACATCTCACATCATAGCACAACTTCTCCCTGTCATCATGGCAAAGCTGGGGCAGACACTAGAGCTTCAAATCCTATCATCGGATGACAGGGAAAAGCAAGGAGATGTACAAGCTTCTCTTTGCGGTGTCCTCCAGGTTATCATTCAGAAACTTGGTGGTAGTGATGAAACCAAGCCTATTATACTCCAAGCTGCCGACCAAATGATGATGTTGTTCCTTAGGGTTTTTGCTTGTCGTAGTTCCACAGTACATGAAGAAGCTATGCTTGCTATTGGTGCACTGGCTTATGCCACTGGACCTGAATTCGGCAAGTATATGCCGGAGTTCTACAAGTATTTGGAGAGGGGTCTGCAGAATTTCGAAGAATACCAGGTTTGTGCTGTATCGGTTGGGGTCGTTGGTGATATTTGCCGTGCAGTAGATGACAAGGTTTTGCCTTATTGTGATGGGATTATGACCCTTCTCCTCAAAGATCTCTCTAGCAGTGAGCTACACCGGTCGGTTAAGCCTCCCATTTTCTCATGCTTTGGGGATGTTGCTCTTGCCATTGGAGAGAACTTTGAGAAGTACATTCATTATGCAGTGCCAATGATGCAGGGGGCAGCTGAGGTGTGTGCTCAGATGGACGACACTGATGAGGAGATGATGGAATATGGGAACCAGCTGAGGCGAAGCATCTTTGAGGCTTATTCTGGTATTTTACAAGGGTTTAAGAGTTCCAAGGCCGAGTTAATGTTGCCCCATGCTCCTCATCTATTGCAGTTCATAGAACTGGTCTCTAAAGACAGACAGAGGGAAGAGAGCGTTACAAAAGCAGCGGTTGAAGTGTTGGGGGATTTAGCAGATGCCCTTGGTTCAAAGGTGAAGACATTGTTCAAAGATCGTGCATTCTGTACTGAACTATTGGGGGAGTGTCTTCAATCTGATGACGAACAGCTCAAGGAGACTGCGACATGGACCCAAGGTCAGGTCAGGTTTACACAAAAGATGGTTGAGGTCGTGGATCCTCGTGTCTTTTTTGTATTGCAGAGCAAGTTTCAGAATTCAAGAAATGTCTCTTTATTTTATGATCCGTCTGCTATGGGGTCAAAAGGTTGGTCTGTGTTAGATTTAGTTCTAGGCATCAATGTCTTAAGATTTTATTGTAATGGAACTGTTCACTTTACTGCATTACCAATTGGGGGTTGTCTTCAGTTATTATCCCTTTGA

Network for GWHGAAZE005380

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03810.20	IBN_N	23	103	3.30E-11
PF13513.7	HEAT_EZ	382	437	2.00E-06

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14293	KPNB1, IPO1	RNA transport	map03013

Gene Ontology

GO term	Ontology	Name
GO:0006886	biological_process	intracellular protein transport
GO:0008536	molecular_function	Ran GTPase binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	35.944
	SRR3591706	second leaf	8.918
	SRR3591707	mature leaf	9.138
	SRR3591708	Shoot apex	44.043
	SRR3591709	Stem	20.610
	SRR3591710	White floral bud	14.893
	SRR3591711	White flower	25.939
	SRR3591712	Green floral bud	26.989
	SRR3591713	Yellow flower	18.408
SRP173429	SRR8316895	Juvenile bud stage	20.818
	SRR8316896	Juvenile bud stage	24.521
	SRR8316897	Juvenile bud stage	10.268
	SRR8316894	Third green stage	7.740
	SRR8316900	Third green stage	29.104
	SRR8316901	Third green stage	25.253
	SRR8316898	Complete white stage	4.457
	SRR8316899	Complete white stage	21.411
	SRR8316903	Complete white stage	9.214
	SRR8316902	Silver flowering stage	5.149
	SRR8316904	Silver flowering stage	7.894
	SRR8316905	Silver flowering stage	3.081
	SRR8316906	Gold flowering stage	9.893
	SRR8316907	Gold flowering stage	9.449
	SRR8316908	Gold flowering stage	12.442
SRP132670	SRR6706286	Control	24.641
	SRR6706287	Light intensity 50%	26.747
	SRR6706288	Light intensity 20%	30.201
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.437
	CNS0095593	Slightly white alabastrum(diploid) 2	14.072
	CNS0095594	Slightly white alabastrum(diploid) 3	13.848
	CNS0095595	Whole white alabastrum(diploid) 2	11.868
	CNS0095596	Whole white alabastrum(diploid) 3	12.125
	CNS0095597	Whole white alabastrum(diploid) 4	10.414
	CNS0095598	Silvery flower (diploied) 1	15.424
	CNS0095599	Silvery flower (diploied) 2	16.456
	CNS0095600	Silvery flower (diploied) 3	22.360
	CNS0095601	Golden flower (diploid) 1	10.931
	CNS0095602	Golden flower (diploid) 2	19.759
	CNS0095603	Golden flower (diploid) 3	18.525
	CNS0095604	Slightly white alabastrum(tetraploid) 1	17.173
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.763
	CNS0095606	Slightly white alabastrum(tetraploid) 3	37.946
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.280
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.415
	CNS0095609	Whole white alabastrum(tetraploid) 3	25.657
	CNS0095610	Silvery flower (tetraploid) 1	25.335
	CNS0095611	Silvery flower (tetraploid) 2	26.672
	CNS0095612	Silvery flower (tetraploid) 3	15.129
	CNS0095613	Golden flower (tetraploid) 1	8.418
	CNS0095614	Golden flower (tetraploid) 2	17.642
	CNS0095615	Golden flower (tetraploid) 3	8.424
CRA001975	CRR073297	Stem 1	28.969
	CRR073298	Stem 2	30.403
	CRR073299	Stem 3	37.508
	CRR073300	Leaf 1	32.492
	CRR073301	Leaf 2	33.543
	CRR073302	Leaf 3	27.535
	CRR073303	Juvenile bud 1	35.560
	CRR073304	Juvenile bud 2	25.010
	CRR073305	Juvenile bud 3	46.011
	CRR073306	Third green 1	2.833
	CRR073307	Third green 2	3.581
	CRR073308	Third green 3	4.660
	CRR073309	Second white 1	10.688
	CRR073310	Second white 2	6.922
	CRR073311	Second white 3	5.552
	CRR073312	Silver flowering 1	6.284
	CRR073313	Silver flowering 2	12.074
	CRR073314	Silver flowering 3	8.954
	CRR073315	Gold flowering 1	11.676
	CRR073316	Gold flowering 2	16.552
	CRR073317	Gold flowering 3	20.780
	CRR073318	Tawny withering 1	30.553
	CRR073319	Tawny withering 2	20.376
	CRR073320	Tawny withering 3	28.638