Detail information of GWHGAAZE005388


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrEYU41928.10hypothetical protein MIMGU_mgv1a003147mg [Erythranthe guttata]
Swissprottr|O82647|PDC1_ARATH0Pyruvate decarboxylase 1
trEMBLtr|A0A022RQA0|A0A022RQA0_ERYGU0Uncharacterized protein {ECO:0000313|EMBL:EYU41928.1}
TAIR10AT4G33070.10Thiamine pyrophosphate dependent pyruvate decarboxylase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene71184587121277-
GWHAAZE00000002mRNA71184587121277-
GWHAAZE00000002exon71184587118628-
GWHAAZE00000002exon71187357118923-
GWHAAZE00000002exon71190627119179-
GWHAAZE00000002exon71192767119926-
GWHAAZE00000002exon71201297120292-
GWHAAZE00000002exon71207507121277-
GWHAAZE00000002CDS71207507121277-
GWHAAZE00000002CDS71201297120292-
GWHAAZE00000002CDS71192767119926-
GWHAAZE00000002CDS71190627119179-
GWHAAZE00000002CDS71187357118923-
GWHAAZE00000002CDS71184587118628-
Transcript Sequence

Network for GWHGAAZE005388

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02776.19TPP_enzyme_N452135.90E-34
PF00205.23TPP_enzyme_M2423581.10E-20
PF02775.22TPP_enzyme_C4525773.00E-14
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01568PDC, pdc Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Glycolysis / Gluconeogenesismap00010

Gene Ontology

GO term OntologyName
GO:0030976molecular_functionthiamine pyrophosphate binding
GO:0000287molecular_functionmagnesium ion binding
GO:0016831molecular_functioncarboxy-lyase activity
GO:0003824molecular_functioncatalytic activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf25.606
SRR3591706second leaf9.654
SRR3591707mature leaf38.408
SRR3591708Shoot apex5.780
SRR3591709Stem34.547
SRR3591710White floral bud37.558
SRR3591711White flower30.328
SRR3591712Green floral bud23.970
SRR3591713Yellow flower11.845
SRP173429 SRR8316895Juvenile bud stage 16.999
SRR8316896Juvenile bud stage 23.406
SRR8316897Juvenile bud stage 9.309
SRR8316894Third green stage 11.758
SRR8316900Third green stage 40.660
SRR8316901Third green stage 37.670
SRR8316898Complete white stage 18.420
SRR8316899Complete white stage 44.578
SRR8316903Complete white stage 31.649
SRR8316902Silver flowering stage23.533
SRR8316904Silver flowering stage39.800
SRR8316905Silver flowering stage15.285
SRR8316906Gold flowering stage 37.324
SRR8316907Gold flowering stage 40.414
SRR8316908Gold flowering stage 45.579
SRP132670SRR6706286Control57.437
SRR6706287Light intensity 50%63.413
SRR6706288Light intensity 20%66.992
CNP0000432CNS0095592Slightly white alabastrum(diploid) 128.268
CNS0095593Slightly white alabastrum(diploid) 236.269
CNS0095594Slightly white alabastrum(diploid) 325.825
CNS0095595Whole white alabastrum(diploid) 231.546
CNS0095596Whole white alabastrum(diploid) 333.509
CNS0095597Whole white alabastrum(diploid) 429.678
CNS0095598Silvery flower (diploied) 150.559
CNS0095599Silvery flower (diploied) 241.297
CNS0095600Silvery flower (diploied) 357.284
CNS0095601Golden flower (diploid) 138.873
CNS0095602Golden flower (diploid) 252.707
CNS0095603Golden flower (diploid) 349.551
CNS0095604Slightly white alabastrum(tetraploid) 147.960
CNS0095605Slightly white alabastrum(tetraploid) 239.990
CNS0095606Slightly white alabastrum(tetraploid) 387.785
CNS0095607Whole white alabastrum(tetraploid) 125.565
CNS0095608Whole white alabastrum(tetraploid) 227.534
CNS0095609Whole white alabastrum(tetraploid) 368.238
CNS0095610Silvery flower (tetraploid) 168.462
CNS0095611Silvery flower (tetraploid) 260.032
CNS0095612Silvery flower (tetraploid) 344.097
CNS0095613Golden flower (tetraploid) 128.258
CNS0095614Golden flower (tetraploid) 245.944
CNS0095615Golden flower (tetraploid) 314.675
CRA001975CRR073297Stem 133.985
CRR073298Stem 233.193
CRR073299Stem 339.012
CRR073300Leaf 154.017
CRR073301Leaf 268.494
CRR073302Leaf 369.857
CRR073303Juvenile bud 166.304
CRR073304Juvenile bud 249.037
CRR073305Juvenile bud 396.171
CRR073306Third green 157.653
CRR073307Third green 268.414
CRR073308Third green 369.125
CRR073309Second white 139.402
CRR073310Second white 231.389
CRR073311Second white 320.667
CRR073312Silver flowering 121.220
CRR073313Silver flowering 229.369
CRR073314Silver flowering 328.426
CRR073315Gold flowering 150.660
CRR073316Gold flowering 273.618
CRR073317Gold flowering 363.055
CRR073318Tawny withering 1219.807
CRR073319Tawny withering 253.460
CRR073320Tawny withering 3363.425