Detail information of GWHGAAZE005391


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007026649.10UbiA prenyltransferase family protein isoform 1 [Theobroma cacao]
Swissprottr|Q5W6H5|CHLG_ORYSJ0Chlorophyll synthase, chloroplastic (Precursor)
trEMBLtr|A0A061EQQ4|A0A061EQQ4_THECC0UbiA prenyltransferase family protein isoform 1 {ECO:0000313|EMBL:EOY07151.1}
TAIR10AT3G51820.12E-146UbiA prenyltransferase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene71701467176230-
GWHAAZE00000002mRNA71701467176230-
GWHAAZE00000002exon71761977176230-
GWHAAZE00000002exon71760167176104-
GWHAAZE00000002exon71752287175315-
GWHAAZE00000002exon71748507174935-
GWHAAZE00000002exon71746717174757-
GWHAAZE00000002exon71745207174585-
GWHAAZE00000002exon71743707174453-
GWHAAZE00000002exon71741647174267-
GWHAAZE00000002exon71740137174088-
GWHAAZE00000002exon71738617173923-
GWHAAZE00000002exon71736667173747-
GWHAAZE00000002exon71727237172799-
GWHAAZE00000002exon71724357172482-
GWHAAZE00000002exon71701467170515-
GWHAAZE00000002CDS71761977176230-
GWHAAZE00000002CDS71760167176104-
GWHAAZE00000002CDS71752287175315-
GWHAAZE00000002CDS71748507174935-
GWHAAZE00000002CDS71746717174757-
GWHAAZE00000002CDS71745207174585-
GWHAAZE00000002CDS71743707174453-
GWHAAZE00000002CDS71741647174267-
GWHAAZE00000002CDS71740137174088-
GWHAAZE00000002CDS71738617173923-
GWHAAZE00000002CDS71736667173747-
GWHAAZE00000002CDS71727237172799-
GWHAAZE00000002CDS71724357172482-
GWHAAZE00000002CDS71704507170515-
GWHAAZE00000002three_prime_UTR71701467170449-
Transcript Sequence

Network for GWHGAAZE005391

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01040.19UbiA623168.40E-34
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K04040chlG, bchG Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Porphyrin and chlorophyll metabolismmap00860

Gene Ontology

GO term OntologyName
GO:0015995biological_processchlorophyll biosynthetic process
GO:0016021cellular_componentintegral component of membrane
GO:0046408molecular_functionchlorophyll synthetase activity
GO:0016765molecular_functiontransferase activity, transferring alkyl or aryl (other than methyl) groups

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf3.557
SRR3591706second leaf1.621
SRR3591707mature leaf2.158
SRR3591708Shoot apex4.285
SRR3591709Stem2.502
SRR3591710White floral bud7.496
SRR3591711White flower7.925
SRR3591712Green floral bud3.064
SRR3591713Yellow flower21.238
SRP173429 SRR8316895Juvenile bud stage 2.678
SRR8316896Juvenile bud stage 4.458
SRR8316897Juvenile bud stage 1.284
SRR8316894Third green stage 1.226
SRR8316900Third green stage 3.226
SRR8316901Third green stage 3.099
SRR8316898Complete white stage 2.530
SRR8316899Complete white stage 4.319
SRR8316903Complete white stage 3.334
SRR8316902Silver flowering stage2.359
SRR8316904Silver flowering stage3.872
SRR8316905Silver flowering stage2.460
SRR8316906Gold flowering stage 7.871
SRR8316907Gold flowering stage 7.153
SRR8316908Gold flowering stage 12.322
SRP132670SRR6706286Control1.367
SRR6706287Light intensity 50%2.159
SRR6706288Light intensity 20%2.443
CNP0000432CNS0095592Slightly white alabastrum(diploid) 14.310
CNS0095593Slightly white alabastrum(diploid) 23.137
CNS0095594Slightly white alabastrum(diploid) 33.421
CNS0095595Whole white alabastrum(diploid) 22.120
CNS0095596Whole white alabastrum(diploid) 31.637
CNS0095597Whole white alabastrum(diploid) 42.196
CNS0095598Silvery flower (diploied) 15.671
CNS0095599Silvery flower (diploied) 22.247
CNS0095600Silvery flower (diploied) 36.804
CNS0095601Golden flower (diploid) 14.723
CNS0095602Golden flower (diploid) 27.259
CNS0095603Golden flower (diploid) 36.006
CNS0095604Slightly white alabastrum(tetraploid) 12.679
CNS0095605Slightly white alabastrum(tetraploid) 22.212
CNS0095606Slightly white alabastrum(tetraploid) 32.626
CNS0095607Whole white alabastrum(tetraploid) 11.416
CNS0095608Whole white alabastrum(tetraploid) 21.477
CNS0095609Whole white alabastrum(tetraploid) 31.971
CNS0095610Silvery flower (tetraploid) 18.645
CNS0095611Silvery flower (tetraploid) 27.899
CNS0095612Silvery flower (tetraploid) 35.873
CNS0095613Golden flower (tetraploid) 19.449
CNS0095614Golden flower (tetraploid) 210.602
CNS0095615Golden flower (tetraploid) 39.628
CRA001975CRR073297Stem 12.600
CRR073298Stem 21.893
CRR073299Stem 31.640
CRR073300Leaf 11.739
CRR073301Leaf 22.566
CRR073302Leaf 31.631
CRR073303Juvenile bud 12.025
CRR073304Juvenile bud 21.411
CRR073305Juvenile bud 32.586
CRR073306Third green 11.525
CRR073307Third green 21.805
CRR073308Third green 30.728
CRR073309Second white 12.247
CRR073310Second white 22.828
CRR073311Second white 31.639
CRR073312Silver flowering 13.539
CRR073313Silver flowering 22.770
CRR073314Silver flowering 32.847
CRR073315Gold flowering 11.017
CRR073316Gold flowering 22.442
CRR073317Gold flowering 31.246
CRR073318Tawny withering 11.785
CRR073319Tawny withering 22.465
CRR073320Tawny withering 31.993