Gene detail

Detail information of GWHGAAZE005393

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011077538.1	PREDICTED: AMP deaminase-like isoform X1 [Sesamum indicum]
Swissprot	tr\|O80452\|AMPD_ARATH	AMP deaminase
trEMBL	tr\|D7SY29\|D7SY29_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI22812.3}
TAIR10	AT2G38280.2	AMP deaminase, putative / myoadenylate deaminase, putative

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	7223488	7235402	+
GWHAAZE00000002	mRNA	7223488	7235402	+
GWHAAZE00000002	exon	7223488	7223893	+
GWHAAZE00000002	exon	7225868	7226052	+
GWHAAZE00000002	exon	7226294	7226474	+
GWHAAZE00000002	exon	7226970	7227148	+
GWHAAZE00000002	exon	7227302	7227353	+
GWHAAZE00000002	exon	7227447	7227574	+
GWHAAZE00000002	exon	7227681	7227860	+
GWHAAZE00000002	exon	7228106	7228173	+
GWHAAZE00000002	exon	7228309	7228451	+
GWHAAZE00000002	exon	7229030	7229091	+
GWHAAZE00000002	exon	7229928	7230041	+
GWHAAZE00000002	exon	7231593	7231733	+
GWHAAZE00000002	exon	7233494	7233646	+
GWHAAZE00000002	exon	7233850	7233903	+
GWHAAZE00000002	exon	7233994	7234104	+
GWHAAZE00000002	exon	7234207	7234380	+
GWHAAZE00000002	exon	7234459	7234539	+
GWHAAZE00000002	exon	7235118	7235216	+
GWHAAZE00000002	exon	7235334	7235402	+
GWHAAZE00000002	CDS	7223488	7223893	+
GWHAAZE00000002	CDS	7225868	7226052	+
GWHAAZE00000002	CDS	7226294	7226474	+
GWHAAZE00000002	CDS	7226970	7227148	+
GWHAAZE00000002	CDS	7227302	7227353	+
GWHAAZE00000002	CDS	7227447	7227574	+
GWHAAZE00000002	CDS	7227681	7227860	+
GWHAAZE00000002	CDS	7228106	7228173	+
GWHAAZE00000002	CDS	7228309	7228451	+
GWHAAZE00000002	CDS	7229030	7229091	+
GWHAAZE00000002	CDS	7229928	7230041	+
GWHAAZE00000002	CDS	7231593	7231733	+
GWHAAZE00000002	CDS	7233494	7233646	+
GWHAAZE00000002	CDS	7233850	7233903	+
GWHAAZE00000002	CDS	7233994	7234104	+
GWHAAZE00000002	CDS	7234207	7234380	+
GWHAAZE00000002	CDS	7234459	7234539	+
GWHAAZE00000002	CDS	7235118	7235216	+
GWHAAZE00000002	CDS	7235334	7235402	+

Transcript Sequence
>GWHTAAZE005399 ATGGATGCGCATGCGTTGCATCTGGCTTTGGCGGCACTAGTCGGAGCCTCGTTCGTGGCAGTATCGGCCTACTACATGCACCGTAAAACCCTAAATCAGTTGTTGGAGTTCGCCAAGACCATTGATAGAGGAGAAAGGGAGAGAGAAGAAGAAGAAGAAGAAGACGCTGCTGAACAAGAATACCTCGGACGAGGCGCCGACTCGCCTAGTCATTTCAAAAGGTACGCCGATAAGCGGCGGAACTACGGCCGTAAAAAGTGGAATGGCTATTACCGTCGCTCTTCTGCGTCTTTGCCGGACGTCACTGCGTTTTCTTGTCCCGGCGATGGCGACGAGAGGCGGAATGGCCCGGTCCGCGTCGATTCAATTCCGGCAGGGTTGCCAAGGCTGCATACTCTTCCCGAAGGTAAATCTTCTTCCAATGCACATCCAACAAAGAGAAGTGCTGGACATCTAGTTAGACCTACTTCTCCAAAGTCTCCTGTTGCCAGTGCGAGTGCATTTGAAAGTGTAGAAGGATCAGATGATGAAGATAATATGACTGACAGTGGTAAACTAGACACTACGTATCTTCATACCAATGGAACCGGTAATTTACCGGACCACATTAATGCCAATGGAGAGCAAATGCCTGTAGCTGCATCTACTATGATTCGTTCCCATAGTGTATCTGGTGACCTTCATGGTGTTCAACCTGACCCTGTAGCAGCTGATATTCTTAGGAAAGAGCCAGAGCAAGAAACTTTTGTTCGACTTAAAATTTCCCCAACCGAGACACCGGCGGCTGATGAAGTGGAGGTTTATCGGACTATGCAAGCTTGCCTTGAAATGAGACAAAGTTATGTATTTAAGGAAGCTGTTGCTTCATGGGAGAAAGAGGTTATATTGGATCCTAGTACCCCGAAGCCTAATCTAAATCCATTTGATTATACTCCAGAAGGAAAATCTGAGCATTATTTTCAGATGGAAGATGGAGTCGTTCATGTTTATGCAAACAAAGATTCAAAAGAGAAGCTTTTTCCCATTGCTGATGCAACGACTTTTTTCACCGACTTGCATTACATCCTGAAAGTCATAGCGGCTGGGAACATCCGAACATTATGTCACCATCGGCTAGTTCTTCTAGAACAAAAATTCAATCTACATTTGATGCTTAATGCGGATAGAGAATTCCTAGCTCAGAAAAGTGCACCTCACCGTGACTTTTATAATGTAAGGAAAGTTGACACACACGTTCATCACTCCGCGTGTATGAACCAGAAACATCTTTTGCGGTTCATCAAATCTAAGTTGCGAAAGGAACCTGATGAGGTTGTAATATTTCGAGACGGAACATACCTGACCTTGAAAGAGGTTTTTGAAAGCTTGGATTTAACTGGGTATGATCTAAATGTGGACCTTTTGGATGTTCATGCTGACAAGAGCACTTTTCATCGTTTTGACAAATTCAACCTGAAGTATAATCCGTGTGGCCAAAGTAGGCTCAGAGAGATTTTCTTGAAGCAAGATAATCTTATCCAGGGTCGTTTTCTTGCTGAGCTGACGAAGCAAGTATTTTCTGATCTTGGTGCGAGTAAATACCAAATGGCTGAATACAGGATATCTATATATGGGAGAAAACAAAGTGAGTGGGACCAGATGGCAAGTTGGATAGTGAATAACGAATTGTACAGTGAGAATGTTGTTTGGTTGATTCAGCTTCCTCGACTGTACAATATCTACAAGGAGATGGGGATAGTTACATCATTTCAGAACATTCTTGACAATATCTTTCTTCCTCTATTCGAGGTTACTGTTGATCCAGAGTCGCATCCTCAATTGCATGTTTTTTTGAAGCAGGTTGTTGGGTTGGATTTGGTGGATGATGAAACCAAGCCTGAAAGACGCCCGACAAAACACATGCCAACTCCGGATCAATGGACAAACATATTCAACCCTGCATTTTCATACTATGCGTACTATTGTTATGCTAACCTCTATACCTTAAACAAGCTCCGTGAGTCGAAGGGCATGACAACTATCAAATTCCGTCCGCATTCTGGGGAGGCTGGTGATATTGACCACCTTGCTGCTACATTTCTTACGGCTCATAATATTGCACATGGAATTAATTTGAGAAAGTCCCCCGTACTTCAATATTTGTACTACTTGGCCCAGATTGGTCTGGCTATGTCGCCTTTGAGCAACAACTCCTTATTTTTGGACTACCATAGGAACCCTTTTCCAATGTTCTTCCTAAGGGGCCTCAATGTTTCCCTTTCTACCGATGATCCATTACAAATTCACCTAACTAAAGAGCCTCTGGTGGAAGAATACAGCATAGCTGCATCTGTTTGGAAGTTGAGTTCATGTGATCTTTGTGAGATTGCCCGTAATTCAGTCTACCAGTCAGGTTTTTCACATGCTCTGAAGTCCCACTGGATTGGGAGAGAGTACTATAGGAGAGGACCCGATGGGAATGATATTCACAGGACAAATGTGCCTCATATCCGTCTGGAATTCCGCGATACGATTTGGAGAGAGGAGATGCAACAGGTTTACCTTGGCAAAGCCATTTTTCCTGAACATATTGGCACATAA

Network for GWHGAAZE005393

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00962.23	A_deaminase	404	809	4.40E-127

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01490	AMPD	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Purine metabolism	map00230

Gene Ontology

GO term	Ontology	Name
GO:0032264	biological_process	IMP salvage
GO:0009168	biological_process	purine ribonucleoside monophosphate biosynthetic process
GO:0003876	molecular_function	AMP deaminase activity
GO:0019239	molecular_function	deaminase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	39.917
	SRR3591706	second leaf	13.481
	SRR3591707	mature leaf	27.310
	SRR3591708	Shoot apex	19.502
	SRR3591709	Stem	29.171
	SRR3591710	White floral bud	28.705
	SRR3591711	White flower	29.848
	SRR3591712	Green floral bud	24.200
	SRR3591713	Yellow flower	18.900
SRP173429	SRR8316895	Juvenile bud stage	19.725
	SRR8316896	Juvenile bud stage	21.837
	SRR8316897	Juvenile bud stage	10.833
	SRR8316894	Third green stage	12.655
	SRR8316900	Third green stage	35.770
	SRR8316901	Third green stage	28.550
	SRR8316898	Complete white stage	11.009
	SRR8316899	Complete white stage	46.746
	SRR8316903	Complete white stage	26.455
	SRR8316902	Silver flowering stage	10.484
	SRR8316904	Silver flowering stage	16.890
	SRR8316905	Silver flowering stage	8.693
	SRR8316906	Gold flowering stage	19.643
	SRR8316907	Gold flowering stage	20.734
	SRR8316908	Gold flowering stage	19.310
SRP132670	SRR6706286	Control	32.080
	SRR6706287	Light intensity 50%	30.111
	SRR6706288	Light intensity 20%	32.085
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.674
	CNS0095593	Slightly white alabastrum(diploid) 2	13.889
	CNS0095594	Slightly white alabastrum(diploid) 3	14.806
	CNS0095595	Whole white alabastrum(diploid) 2	13.631
	CNS0095596	Whole white alabastrum(diploid) 3	12.066
	CNS0095597	Whole white alabastrum(diploid) 4	12.150
	CNS0095598	Silvery flower (diploied) 1	56.333
	CNS0095599	Silvery flower (diploied) 2	36.497
	CNS0095600	Silvery flower (diploied) 3	38.508
	CNS0095601	Golden flower (diploid) 1	36.404
	CNS0095602	Golden flower (diploid) 2	58.395
	CNS0095603	Golden flower (diploid) 3	56.059
	CNS0095604	Slightly white alabastrum(tetraploid) 1	16.770
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.132
	CNS0095606	Slightly white alabastrum(tetraploid) 3	31.624
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.458
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.893
	CNS0095609	Whole white alabastrum(tetraploid) 3	21.032
	CNS0095610	Silvery flower (tetraploid) 1	30.506
	CNS0095611	Silvery flower (tetraploid) 2	33.085
	CNS0095612	Silvery flower (tetraploid) 3	10.964
	CNS0095613	Golden flower (tetraploid) 1	9.125
	CNS0095614	Golden flower (tetraploid) 2	21.040
	CNS0095615	Golden flower (tetraploid) 3	6.813
CRA001975	CRR073297	Stem 1	28.797
	CRR073298	Stem 2	25.134
	CRR073299	Stem 3	23.399
	CRR073300	Leaf 1	24.926
	CRR073301	Leaf 2	19.789
	CRR073302	Leaf 3	22.978
	CRR073303	Juvenile bud 1	25.418
	CRR073304	Juvenile bud 2	16.763
	CRR073305	Juvenile bud 3	33.055
	CRR073306	Third green 1	8.969
	CRR073307	Third green 2	7.072
	CRR073308	Third green 3	8.094
	CRR073309	Second white 1	5.344
	CRR073310	Second white 2	4.654
	CRR073311	Second white 3	5.021
	CRR073312	Silver flowering 1	4.892
	CRR073313	Silver flowering 2	4.077
	CRR073314	Silver flowering 3	3.960
	CRR073315	Gold flowering 1	14.932
	CRR073316	Gold flowering 2	22.836
	CRR073317	Gold flowering 3	13.486
	CRR073318	Tawny withering 1	27.360
	CRR073319	Tawny withering 2	22.935
	CRR073320	Tawny withering 3	21.057