Detail information of GWHGAAZE005404


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrKHG15610.19.574E-147PHD finger ALFIN-LIKE 1 -like protein [Gossypium arboreum]
Swissprottr|Q9FFF5|ALFL1_ARATH2E-120PHD finger protein ALFIN-LIKE 1
trEMBLtr|V7ANT5|V7ANT5_PHAVU9E-144Uncharacterized protein {ECO:0000313|EMBL:ESW05881.1}
TAIR10AT5G05610.24E-75alfin-like 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene74307687435720-
GWHAAZE00000002mRNA74307687435720-
GWHAAZE00000002exon74307687431019-
GWHAAZE00000002exon74312387431358-
GWHAAZE00000002exon74345287434750-
GWHAAZE00000002exon74353137435345-
GWHAAZE00000002exon74354407435720-
GWHAAZE00000002five_prime_UTR74355407435720-
GWHAAZE00000002CDS74354407435539-
GWHAAZE00000002CDS74353137435345-
GWHAAZE00000002CDS74345287434750-
GWHAAZE00000002CDS74312387431358-
GWHAAZE00000002CDS74307687431019-
Transcript Sequence

Network for GWHGAAZE005404

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF12165.9Alfin121371.20E-65
PF00628.30PHD1892378.30E-11
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyAlfin-like

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006355biological_processregulation of transcription, DNA-templated
GO:0042393molecular_functionhistone binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf67.686
SRR3591706second leaf41.973
SRR3591707mature leaf45.577
SRR3591708Shoot apex80.951
SRR3591709Stem59.851
SRR3591710White floral bud73.058
SRR3591711White flower77.146
SRR3591712Green floral bud78.154
SRR3591713Yellow flower65.004
SRP173429 SRR8316895Juvenile bud stage 42.309
SRR8316896Juvenile bud stage 56.750
SRR8316897Juvenile bud stage 27.392
SRR8316894Third green stage 25.150
SRR8316900Third green stage 81.606
SRR8316901Third green stage 78.217
SRR8316898Complete white stage 42.185
SRR8316899Complete white stage 104.754
SRR8316903Complete white stage 53.188
SRR8316902Silver flowering stage32.338
SRR8316904Silver flowering stage37.508
SRR8316905Silver flowering stage18.649
SRR8316906Gold flowering stage 53.924
SRR8316907Gold flowering stage 49.229
SRR8316908Gold flowering stage 57.146
SRP132670SRR6706286Control123.270
SRR6706287Light intensity 50%113.542
SRR6706288Light intensity 20%121.606
CNP0000432CNS0095592Slightly white alabastrum(diploid) 160.275
CNS0095593Slightly white alabastrum(diploid) 270.441
CNS0095594Slightly white alabastrum(diploid) 361.773
CNS0095595Whole white alabastrum(diploid) 257.728
CNS0095596Whole white alabastrum(diploid) 348.878
CNS0095597Whole white alabastrum(diploid) 450.495
CNS0095598Silvery flower (diploied) 172.561
CNS0095599Silvery flower (diploied) 257.013
CNS0095600Silvery flower (diploied) 364.767
CNS0095601Golden flower (diploid) 165.887
CNS0095602Golden flower (diploid) 264.380
CNS0095603Golden flower (diploid) 369.212
CNS0095604Slightly white alabastrum(tetraploid) 161.779
CNS0095605Slightly white alabastrum(tetraploid) 255.033
CNS0095606Slightly white alabastrum(tetraploid) 395.484
CNS0095607Whole white alabastrum(tetraploid) 140.876
CNS0095608Whole white alabastrum(tetraploid) 241.392
CNS0095609Whole white alabastrum(tetraploid) 361.701
CNS0095610Silvery flower (tetraploid) 167.486
CNS0095611Silvery flower (tetraploid) 266.334
CNS0095612Silvery flower (tetraploid) 348.536
CNS0095613Golden flower (tetraploid) 152.256
CNS0095614Golden flower (tetraploid) 262.299
CNS0095615Golden flower (tetraploid) 362.205
CRA001975CRR073297Stem 197.079
CRR073298Stem 295.754
CRR073299Stem 3133.666
CRR073300Leaf 1103.666
CRR073301Leaf 2117.752
CRR073302Leaf 3151.370
CRR073303Juvenile bud 1127.893
CRR073304Juvenile bud 2119.965
CRR073305Juvenile bud 3104.889
CRR073306Third green 173.076
CRR073307Third green 272.414
CRR073308Third green 366.875
CRR073309Second white 149.203
CRR073310Second white 259.327
CRR073311Second white 338.425
CRR073312Silver flowering 136.165
CRR073313Silver flowering 237.357
CRR073314Silver flowering 328.886
CRR073315Gold flowering 185.931
CRR073316Gold flowering 287.652
CRR073317Gold flowering 367.421
CRR073318Tawny withering 1108.056
CRR073319Tawny withering 299.146
CRR073320Tawny withering 3100.693