Gene detail

Detail information of GWHGAAZE005406

Functional Annotation

Database	Orthologs	Annotation
Nr	CDP06481.1	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q39033\|PLCD2_ARATH	Phosphoinositide phospholipase C 2
trEMBL	tr\|A0A068UDA9\|A0A068UDA9_COFCA	Phosphoinositide phospholipase C {ECO:0000256\|RuleBase:RU361133}
TAIR10	AT3G08510.2	phospholipase C 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	7460688	7465202	-
GWHAAZE00000002	mRNA	7460688	7465202	-
GWHAAZE00000002	exon	7460688	7461206	-
GWHAAZE00000002	exon	7461402	7461488	-
GWHAAZE00000002	exon	7461596	7461748	-
GWHAAZE00000002	exon	7461851	7461968	-
GWHAAZE00000002	exon	7462074	7462309	-
GWHAAZE00000002	exon	7462417	7462668	-
GWHAAZE00000002	exon	7462766	7462901	-
GWHAAZE00000002	exon	7463053	7463249	-
GWHAAZE00000002	exon	7464882	7465202	-
GWHAAZE00000002	CDS	7464882	7465202	-
GWHAAZE00000002	CDS	7463053	7463249	-
GWHAAZE00000002	CDS	7462766	7462901	-
GWHAAZE00000002	CDS	7462417	7462668	-
GWHAAZE00000002	CDS	7462074	7462309	-
GWHAAZE00000002	CDS	7461851	7461968	-
GWHAAZE00000002	CDS	7461596	7461748	-
GWHAAZE00000002	CDS	7461402	7461488	-
GWHAAZE00000002	CDS	7460913	7461206	-
GWHAAZE00000002	three_prime_UTR	7460688	7460912	-

Transcript Sequence
>GWHTAAZE005412 ATGTCGAAGCAAACTTACAGTGTGTGCTTCTGCTTCCGGCGAAAGTTCAAGGTCGCCGTTGCCGAAGCTCCGGCCGAGATCAAGGACTTGTTCTACCTTTACTCTGATAACGGAATCATGACCGTGGATCACCTTCACAAATTCATTTCGGTGGTTCAAGGAGATGATAAAGTCAACAAGGAAGATGCAGAGTCTATAATGGAGACTACTCTCAATGAACATAAACACCTTAAAATCTTTCACCGTAAAGGTCTCAACCTCGAAGCCTTCTTTCGCTACCTCTTCGCTGACATTAATTCTCCTCTCCCCACCATTCCTAAGGTGCACCAGGATATGAATGCCCCGTTGTCCCATTACTTCATTTATACAGGTCACAATTCCTACCTTACTGGGAATCAACTCAGCAGTAATGCTAGCGAAGTCCCTATCATAGATGCACTTCACAGAGGTGTACGTGTTATTGAGCTTGATATGTGGCCTAATTCTACCAAAGATAATATTGATATTGTTCATGGAGGGACATTAACAGCACCAGTAGAACTCATCAAGTGCCTAAAATCTATTAAGGAGCATGCCTTTGTAGCCTCTGAATATCCCGTAATATTAACTCTAGAAGACCATCTTACTCCAGATCTTCAGGATAAAGTTGCCCAGATGGTCACTCAAACATTTGGAGACGTACTGTTCTACTCCTCAACAGAATGCTACGCAGAGTTTCCTTCCCCCGAATCATTGAAGAGAAAGATTATTATCTCGACAAAACCTCCTAAAGAGTACCTTCAAGATAAGAGTATTAAAGAAAAAGAAAATGGTTCGCAAAAGGTAAAGGATTCATCATCTTTTGAACTAGCCTGGGGAAAGGAAGTCTCGGACCTTAAACAACATAGCCCCGAAGATTTTGATGAGAATGACCAAGAGGATGGGGAGTTTCTCGAGGGCGAAGATCTCAAAAATGAGGATCAGAAGTTGGAGCAGAATAATGTTGCGCTTCAGTATAAGCATCTGATTGCGATTCAAGCTAGGAAACGGAAAGGTGGAATCAAAGAGTGGCTTCACGTGGACCCCACCAAAGCTACGCGTATTAGCTTGAGGGAACAAATGCTTGAAAGTGCCGCAACGACTAATGGAACAGACATTATCAGGTTTACGCAGAAAAATTTGCTGAGAGTATTTCCAAAAGGTATACGGCTTGATTCATCAAATTACAATCCGCTCATTGGATGGATGCACGGAGCTCAGATGGTTGCATTTAACATGCAGGGGTATGGAAGGCCACTTTGGTTGATGCAAGGAATGTTCCGAGCCAACGGTGGTTGTGGATATGTCAAAAAACCAGATTTCTTACTCCAGACTGGACCTCAGAATGAGATCTTTGATCCTAAAAAGACTTTACCCGTAAAAAAGACACTCAAGGTCAAAGTATATATGGGGGAAGGCTGGCATTTGGATTTCCATCGCACACACTTCGACTTGTATTCCCCACCAGACTTCTATGTAAAGGTTGGAATTGCGGGAGTAGGTGAAGACTCGGTGATGAAGAAAACAAAGATAATAAAAGACAGTTGGATACCGGCATGGGACGAGGAGTTTGAGTTCCCGTTGAGAGTTGCTGAGCTGGCATTGCTTCGGATTGAAGTGCACGAGTACGATGTGTCTGAGAAGGACGATTTTGGGGGACAAACATGCCTTCCTGTTTCGGAGTTGAGAAGTGGGATTCGAGCTGTACCACTTCACAGCCAGAAGGGAGATAAGTACAAGTCTGTTAAGCTCCTAATGCGCTTTGAGTTTGTTTAGTTATTGGTCTGTATGTACAACAACGTTGGTCACCTTTTTTTACTACAAGATGGAATGGCCTTTTTGTGTAATGTACAGTTTGTTGGTTTAGTTATTGTGGTTCTGTTCCTCCTTTGGTGTGTGTATATATATAGGATAGAGCTGTTTTTGAATTTTGAGTTTGCTTAATTTAATGCCTTTGTACTGTTGAACTAAAAGGAATAATTACGTTGTGCTTTGGGACAA

Network for GWHGAAZE005406

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00388.20	PI-PLC-X	112	254	1.10E-48
PF00387.20	PI-PLC-Y	359	447	2.20E-26
PF00168.31	C2	469	571	1.10E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05857	PLCD	Metabolic pathways	map01100
		Inositol phosphate metabolism	map00562
		Calcium signaling pathway	map04020
		Phosphatidylinositol signaling system	map04070
		Thyroid hormone signaling pathway	map04919

Gene Ontology

GO term	Ontology	Name
GO:0006629	biological_process	lipid metabolic process
GO:0007165	biological_process	signal transduction
GO:0035556	biological_process	intracellular signal transduction
GO:0004435	molecular_function	phosphatidylinositol phospholipase C activity
GO:0008081	molecular_function	phosphoric diester hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.794
	SRR3591706	second leaf	8.124
	SRR3591707	mature leaf	18.899
	SRR3591708	Shoot apex	8.723
	SRR3591709	Stem	17.787
	SRR3591710	White floral bud	21.592
	SRR3591711	White flower	20.493
	SRR3591712	Green floral bud	20.154
	SRR3591713	Yellow flower	3.882
SRP173429	SRR8316895	Juvenile bud stage	6.508
	SRR8316896	Juvenile bud stage	7.439
	SRR8316897	Juvenile bud stage	3.177
	SRR8316894	Third green stage	2.960
	SRR8316900	Third green stage	6.417
	SRR8316901	Third green stage	6.436
	SRR8316898	Complete white stage	0.842
	SRR8316899	Complete white stage	13.713
	SRR8316903	Complete white stage	3.861
	SRR8316902	Silver flowering stage	0.716
	SRR8316904	Silver flowering stage	1.051
	SRR8316905	Silver flowering stage	0.210
	SRR8316906	Gold flowering stage	0.385
	SRR8316907	Gold flowering stage	0.441
	SRR8316908	Gold flowering stage	1.056
SRP132670	SRR6706286	Control	5.422
	SRR6706287	Light intensity 50%	5.718
	SRR6706288	Light intensity 20%	5.449
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.318
	CNS0095593	Slightly white alabastrum(diploid) 2	4.019
	CNS0095594	Slightly white alabastrum(diploid) 3	4.752
	CNS0095595	Whole white alabastrum(diploid) 2	4.227
	CNS0095596	Whole white alabastrum(diploid) 3	1.075
	CNS0095597	Whole white alabastrum(diploid) 4	4.553
	CNS0095598	Silvery flower (diploied) 1	41.017
	CNS0095599	Silvery flower (diploied) 2	24.631
	CNS0095600	Silvery flower (diploied) 3	4.875
	CNS0095601	Golden flower (diploid) 1	39.116
	CNS0095602	Golden flower (diploid) 2	17.306
	CNS0095603	Golden flower (diploid) 3	15.604
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.585
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.587
	CNS0095606	Slightly white alabastrum(tetraploid) 3	23.104
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.243
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.579
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.577
	CNS0095610	Silvery flower (tetraploid) 1	2.335
	CNS0095611	Silvery flower (tetraploid) 2	10.446
	CNS0095612	Silvery flower (tetraploid) 3	3.550
	CNS0095613	Golden flower (tetraploid) 1	1.853
	CNS0095614	Golden flower (tetraploid) 2	3.992
	CNS0095615	Golden flower (tetraploid) 3	0.964
CRA001975	CRR073297	Stem 1	9.152
	CRR073298	Stem 2	7.965
	CRR073299	Stem 3	4.556
	CRR073300	Leaf 1	7.519
	CRR073301	Leaf 2	5.483
	CRR073302	Leaf 3	4.044
	CRR073303	Juvenile bud 1	2.790
	CRR073304	Juvenile bud 2	2.314
	CRR073305	Juvenile bud 3	3.942
	CRR073306	Third green 1	0.019
	CRR073307	Third green 2	0.107
	CRR073308	Third green 3	0.340
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.195
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.399
	CRR073314	Silver flowering 3	0.050
	CRR073315	Gold flowering 1	5.331
	CRR073316	Gold flowering 2	5.769
	CRR073317	Gold flowering 3	8.525
	CRR073318	Tawny withering 1	10.285
	CRR073319	Tawny withering 2	5.778
	CRR073320	Tawny withering 3	7.317