Detail information of GWHGAAZE005407


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP06483.14.4421E-136unnamed protein product [Coffea canephora]
trEMBLtr|A0A068UFS6|A0A068UFS6_COFCA2E-136Coffea canephora DH200=94 genomic scaffold, scaffold_22 {ECO:0000313|EMBL:CDP06483.1}
TAIR10AT2G38185.24E-67RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene74900977495206-
GWHAAZE00000002mRNA74900977495206-
GWHAAZE00000002exon74900977490434-
GWHAAZE00000002exon74905197490591-
GWHAAZE00000002exon74908227490968-
GWHAAZE00000002exon74919067491988-
GWHAAZE00000002exon74920697492143-
GWHAAZE00000002exon74925347492642-
GWHAAZE00000002exon74939827494034-
GWHAAZE00000002exon74942037494332-
GWHAAZE00000002exon74944117494477-
GWHAAZE00000002exon74949357495206-
GWHAAZE00000002CDS74949357495206-
GWHAAZE00000002CDS74944117494477-
GWHAAZE00000002CDS74942037494332-
GWHAAZE00000002CDS74939827494034-
GWHAAZE00000002CDS74925347492642-
GWHAAZE00000002CDS74920697492143-
GWHAAZE00000002CDS74919067491988-
GWHAAZE00000002CDS74908227490968-
GWHAAZE00000002CDS74905197490591-
GWHAAZE00000002CDS74900977490434-
Transcript Sequence

Network for GWHGAAZE005407

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF16041.6DUF47932403453.10E-32
PF13920.7zf-C3HC4_34184475.10E-07
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf6.133
SRR3591706second leaf6.370
SRR3591707mature leaf7.712
SRR3591708Shoot apex7.129
SRR3591709Stem11.523
SRR3591710White floral bud11.708
SRR3591711White flower8.759
SRR3591712Green floral bud10.281
SRR3591713Yellow flower5.241
SRP173429 SRR8316895Juvenile bud stage 6.027
SRR8316896Juvenile bud stage 8.527
SRR8316897Juvenile bud stage 4.328
SRR8316894Third green stage 3.237
SRR8316900Third green stage 6.512
SRR8316901Third green stage 7.015
SRR8316898Complete white stage 2.503
SRR8316899Complete white stage 9.389
SRR8316903Complete white stage 5.650
SRR8316902Silver flowering stage2.876
SRR8316904Silver flowering stage4.328
SRR8316905Silver flowering stage1.845
SRR8316906Gold flowering stage 6.510
SRR8316907Gold flowering stage 8.407
SRR8316908Gold flowering stage 5.518
SRP132670SRR6706286Control8.153
SRR6706287Light intensity 50%7.385
SRR6706288Light intensity 20%8.321
CNP0000432CNS0095592Slightly white alabastrum(diploid) 110.944
CNS0095593Slightly white alabastrum(diploid) 29.620
CNS0095594Slightly white alabastrum(diploid) 311.368
CNS0095595Whole white alabastrum(diploid) 27.802
CNS0095596Whole white alabastrum(diploid) 39.549
CNS0095597Whole white alabastrum(diploid) 413.782
CNS0095598Silvery flower (diploied) 15.409
CNS0095599Silvery flower (diploied) 26.911
CNS0095600Silvery flower (diploied) 34.500
CNS0095601Golden flower (diploid) 18.683
CNS0095602Golden flower (diploid) 25.526
CNS0095603Golden flower (diploid) 35.437
CNS0095604Slightly white alabastrum(tetraploid) 18.503
CNS0095605Slightly white alabastrum(tetraploid) 210.190
CNS0095606Slightly white alabastrum(tetraploid) 39.820
CNS0095607Whole white alabastrum(tetraploid) 114.453
CNS0095608Whole white alabastrum(tetraploid) 210.766
CNS0095609Whole white alabastrum(tetraploid) 36.393
CNS0095610Silvery flower (tetraploid) 14.387
CNS0095611Silvery flower (tetraploid) 24.309
CNS0095612Silvery flower (tetraploid) 35.216
CNS0095613Golden flower (tetraploid) 13.727
CNS0095614Golden flower (tetraploid) 24.069
CNS0095615Golden flower (tetraploid) 33.079
CRA001975CRR073297Stem 16.211
CRR073298Stem 24.965
CRR073299Stem 34.968
CRR073300Leaf 14.001
CRR073301Leaf 25.081
CRR073302Leaf 32.064
CRR073303Juvenile bud 11.818
CRR073304Juvenile bud 22.180
CRR073305Juvenile bud 32.090
CRR073306Third green 10.895
CRR073307Third green 22.514
CRR073308Third green 31.061
CRR073309Second white 11.218
CRR073310Second white 21.228
CRR073311Second white 31.311
CRR073312Silver flowering 10.401
CRR073313Silver flowering 21.785
CRR073314Silver flowering 30.337
CRR073315Gold flowering 11.292
CRR073316Gold flowering 22.089
CRR073317Gold flowering 30.342
CRR073318Tawny withering 13.161
CRR073319Tawny withering 24.770
CRR073320Tawny withering 33.339