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Detail information of GWHGAAZE005408
Functional Annotation
Database
Orthologs
E value
Annotation
Nr
XP_006429390.1
0
hypothetical protein CICLE_v10011517mg [Citrus clementina]
Swissprot
tr|Q9M028|LMBD2_ARATH
0
LIMR family protein At5g01460
trEMBL
tr|V4SUI2|V4SUI2_9ROSI
0
Uncharacterized protein {ECO:0000313|EMBL:ESR42630.1}
TAIR10
AT5G01460.1
0
LMBR1-like membrane protein
Location And Transcript Sequence
(JBrowse)
Scaffold
Type
Start
End
Strand
GWHAAZE00000002
gene
7503421
7509790
+
GWHAAZE00000002
mRNA
7503421
7509790
+
GWHAAZE00000002
exon
7503421
7503770
+
GWHAAZE00000002
exon
7503859
7503944
+
GWHAAZE00000002
exon
7505389
7505504
+
GWHAAZE00000002
exon
7505681
7505791
+
GWHAAZE00000002
exon
7506208
7506306
+
GWHAAZE00000002
exon
7506419
7506541
+
GWHAAZE00000002
exon
7507544
7507606
+
GWHAAZE00000002
exon
7507714
7507778
+
GWHAAZE00000002
exon
7507991
7508100
+
GWHAAZE00000002
exon
7508188
7508302
+
GWHAAZE00000002
exon
7508403
7508468
+
GWHAAZE00000002
exon
7509374
7509484
+
GWHAAZE00000002
exon
7509588
7509654
+
GWHAAZE00000002
exon
7509746
7509790
+
GWHAAZE00000002
CDS
7503421
7503770
+
GWHAAZE00000002
CDS
7503859
7503944
+
GWHAAZE00000002
CDS
7505389
7505504
+
GWHAAZE00000002
CDS
7505681
7505791
+
GWHAAZE00000002
CDS
7506208
7506306
+
GWHAAZE00000002
CDS
7506419
7506541
+
GWHAAZE00000002
CDS
7507544
7507606
+
GWHAAZE00000002
CDS
7507714
7507778
+
GWHAAZE00000002
CDS
7507991
7508100
+
GWHAAZE00000002
CDS
7508188
7508302
+
GWHAAZE00000002
CDS
7508403
7508468
+
GWHAAZE00000002
CDS
7509374
7509484
+
GWHAAZE00000002
CDS
7509588
7509654
+
GWHAAZE00000002
CDS
7509746
7509790
+
Transcript Sequence
>GWHTAAZE005414 ATGGGCGATTTCAACCTAGCTCTCGTGATCGTAGCTATAATCGTCTGCGTACTGGTCTTCATCTTCAATGTTTATCTCCTCGTTAACTACCAGCACCCGGACGACAAGAACCAGGCCTACTTCCCCAAATTTGTCGTCGTTTTAGGCCTCTCCGTGGCTGCAATCTCTATACTTATGTTGCCGGCCGATGTCGCCAATCGGCAGGCTTGCCGCCACGCGATTTACAACGGCGCTTGTAATCTCACCTTGCCGATGAAGGATCTTTGGCTTTCTATATATATCATTGACGCTATTTTAGTATTCTTCATTATTCCGTTCGCTATGTTCTACTATGAAGGCGACCAGGACAAGAGTATAGGCAAACGGATTAAAAGTGCGATGATCTGGGTAGCAACTACGGCCGTAGTTTGTGGTCTAGTGCTCGGGATTCTCTATGGGCTTGTTGGAAAAGTGGACTTCACTGTTAGACACCTCTCTTCAGCCACTTCAAACTTTCCTAGTTCTTGGGACTTCTCCAGTAACCAACAATGTATTGGAAGTGGTGCACGACAGTGTTCTGCATATACTGCTAGTGCTTCATCAGAGACAACATGGACCATGCGTGCAACCTTTCCAGAATATGTTGTTGCTCTGGCTACCATTGTTGGCTCAGTGCTATTCTCTATATTTGGTGGTGTTGGCATTGCTTGTCTGCCATTGGGACTTATATTTTCATTCATTAGGCGCCCAAAGGCAGTTATTACTCGTTCACAGTATATAAAGGAAGCAACTGAACTAGGTAAGAAAGCTAGAGAACTGAAGAAAGCTGCAGATGCCCTTCATCAGGAAGAAAGGAGTGGCTCTAAGGGAAGAAAATTTCGTAAGAATAAGAAGGCAGTAGAAAAGGAAGTACTTCTTCTGGAAGAAGATGTGAAAGCTTTAGAAGAGATGTACCCCCAAGGTGAAAAGGCCGAGACTACTTGGGCTATGACTGTTCTTGGCTACTTGGCCAAACTTGTGTTAGGAGTTTTAGGGTTGATTGTGTCTGTGGCTTGGGTTGCACATATTGTGATCTACCTACTGATTGATCCACCTCTTTCTGCATTCCTAAACGAGGTTTTCATCAAGTTGGACGATGTCTGGGGTCTTCTGGGTACTGCGGCTTTTGCATTCTTCTGCTTCTATCTCCTGCTGGCAGTGATTGCTGGGGCTATGATGCTCGGATTGAGATTAGTTTTCATTACTATTCATCCAATGAAGTGGGGAGCCACTCTAATGAACTCCTTTCTCTTTAACGTGGGCCTCATTCTTCTTTGCTCCATCAGCGTGATTCAGTTCTGTTCCACAGCATTTGCATACTATGCTCGGGCTACTGCTGCTCAAGAAATATTTGGTCACACATTGCAATCTCTTCGTGGAATCAAATATTTATACAAGTATAATGTGTTTCAAATTGCATTTATTGCTCTAGCTGGTCTTACCTTTGTGTACTATGCAGCCTTTGGATGGAGAAGAAAGAAAGCTGGCAGGTTCCAACTTTCCAGTTGA
Network for GWHGAAZE005408
Network category
Network
Top300 PCC genelist
Coexpression Positive
Network
Top300 PCC genelist
Coexpression Negative
Network
Top300 PCC genelist
Functional Module
Module ID
Function Annotation
CFinderModule0099
Protein Structure
Pfam accession
Pfam name
Alignment start
Alignment end
E-value
PF04791.17
LMBR1
9
276
4.40E-52
PF04791.17
LMBR1
288
487
1.60E-30
Protein Sequence
>GWHPAAZE005411 MGDFNLALVIVAIIVCVLVFIFNVYLLVNYQHPDDKNQAYFPKFVVVLGLSVAAISILMLPADVANRQACRHAIYNGACNLTLPMKDLWLSIYIIDAILVFFIIPFAMFYYEGDQDKSIGKRIKSAMIWVATTAVVCGLVLGILYGLVGKVDFTVRHLSSATSNFPSSWDFSSNQQCIGSGARQCSAYTASASSETTWTMRATFPEYVVALATIVGSVLFSIFGGVGIACLPLGLIFSFIRRPKAVITRSQYIKEATELGKKARELKKAADALHQEERSGSKGRKFRKNKKAVEKEVLLLEEDVKALEEMYPQGEKAETTWAMTVLGYLAKLVLGVLGLIVSVAWVAHIVIYLLIDPPLSAFLNEVFIKLDDVWGLLGTAAFAFFCFYLLLAVIAGAMMLGLRLVFITIHPMKWGATLMNSFLFNVGLILLCSISVIQFCSTAFAYYARATAAQEIFGHTLQSLRGIKYLYKYNVFQIAFIALAGLTFVYYAAFGWRRKKAGRFQLSS
Gene family
Gene family
subfamily
--
--
KEGG pathway
KO
Enzyme
pathway
mapID
K14617
LMBRD1
Vitamin digestion and absorption
map04977
Gene Ontology
GO term
Ontology
Name
Expression pattern
Expression pattern detail
SRP
Sample
Description
TPM
SRP075780
SRR3591705
youngest leaf
101.826
SRR3591706
second leaf
52.509
SRR3591707
mature leaf
24.970
SRR3591708
Shoot apex
67.384
SRR3591709
Stem
69.145
SRR3591710
White floral bud
54.628
SRR3591711
White flower
46.163
SRR3591712
Green floral bud
52.220
SRR3591713
Yellow flower
45.318
SRP173429
SRR8316895
Juvenile bud stage
37.181
SRR8316896
Juvenile bud stage
49.216
SRR8316897
Juvenile bud stage
26.930
SRR8316894
Third green stage
19.164
SRR8316900
Third green stage
58.561
SRR8316901
Third green stage
49.573
SRR8316898
Complete white stage
30.651
SRR8316899
Complete white stage
78.724
SRR8316903
Complete white stage
42.767
SRR8316902
Silver flowering stage
25.355
SRR8316904
Silver flowering stage
40.726
SRR8316905
Silver flowering stage
18.379
SRR8316906
Gold flowering stage
48.427
SRR8316907
Gold flowering stage
50.180
SRR8316908
Gold flowering stage
52.362
SRP132670
SRR6706286
Control
52.727
SRR6706287
Light intensity 50%
58.488
SRR6706288
Light intensity 20%
65.120
CNP0000432
CNS0095592
Slightly white alabastrum(diploid) 1
38.839
CNS0095593
Slightly white alabastrum(diploid) 2
44.163
CNS0095594
Slightly white alabastrum(diploid) 3
27.474
CNS0095595
Whole white alabastrum(diploid) 2
31.109
CNS0095596
Whole white alabastrum(diploid) 3
32.889
CNS0095597
Whole white alabastrum(diploid) 4
30.960
CNS0095598
Silvery flower (diploied) 1
35.948
CNS0095599
Silvery flower (diploied) 2
32.224
CNS0095600
Silvery flower (diploied) 3
77.372
CNS0095601
Golden flower (diploid) 1
36.862
CNS0095602
Golden flower (diploid) 2
70.341
CNS0095603
Golden flower (diploid) 3
69.063
CNS0095604
Slightly white alabastrum(tetraploid) 1
45.892
CNS0095605
Slightly white alabastrum(tetraploid) 2
31.501
CNS0095606
Slightly white alabastrum(tetraploid) 3
93.563
CNS0095607
Whole white alabastrum(tetraploid) 1
27.741
CNS0095608
Whole white alabastrum(tetraploid) 2
22.466
CNS0095609
Whole white alabastrum(tetraploid) 3
60.401
CNS0095610
Silvery flower (tetraploid) 1
64.537
CNS0095611
Silvery flower (tetraploid) 2
64.004
CNS0095612
Silvery flower (tetraploid) 3
61.988
CNS0095613
Golden flower (tetraploid) 1
25.769
CNS0095614
Golden flower (tetraploid) 2
50.598
CNS0095615
Golden flower (tetraploid) 3
54.631
CRA001975
CRR073297
Stem 1
71.242
CRR073298
Stem 2
61.346
CRR073299
Stem 3
73.191
CRR073300
Leaf 1
81.773
CRR073301
Leaf 2
65.874
CRR073302
Leaf 3
79.464
CRR073303
Juvenile bud 1
99.632
CRR073304
Juvenile bud 2
83.188
CRR073305
Juvenile bud 3
104.202
CRR073306
Third green 1
57.408
CRR073307
Third green 2
55.918
CRR073308
Third green 3
61.554
CRR073309
Second white 1
55.123
CRR073310
Second white 2
36.004
CRR073311
Second white 3
41.648
CRR073312
Silver flowering 1
44.842
CRR073313
Silver flowering 2
53.127
CRR073314
Silver flowering 3
39.772
CRR073315
Gold flowering 1
21.259
CRR073316
Gold flowering 2
34.420
CRR073317
Gold flowering 3
32.017
CRR073318
Tawny withering 1
84.359
CRR073319
Tawny withering 2
60.233
CRR073320
Tawny withering 3
90.344