Detail information of GWHGAAZE005408


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006429390.10hypothetical protein CICLE_v10011517mg [Citrus clementina]
Swissprottr|Q9M028|LMBD2_ARATH0LIMR family protein At5g01460
trEMBLtr|V4SUI2|V4SUI2_9ROSI0Uncharacterized protein {ECO:0000313|EMBL:ESR42630.1}
TAIR10AT5G01460.10LMBR1-like membrane protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene75034217509790+
GWHAAZE00000002mRNA75034217509790+
GWHAAZE00000002exon75034217503770+
GWHAAZE00000002exon75038597503944+
GWHAAZE00000002exon75053897505504+
GWHAAZE00000002exon75056817505791+
GWHAAZE00000002exon75062087506306+
GWHAAZE00000002exon75064197506541+
GWHAAZE00000002exon75075447507606+
GWHAAZE00000002exon75077147507778+
GWHAAZE00000002exon75079917508100+
GWHAAZE00000002exon75081887508302+
GWHAAZE00000002exon75084037508468+
GWHAAZE00000002exon75093747509484+
GWHAAZE00000002exon75095887509654+
GWHAAZE00000002exon75097467509790+
GWHAAZE00000002CDS75034217503770+
GWHAAZE00000002CDS75038597503944+
GWHAAZE00000002CDS75053897505504+
GWHAAZE00000002CDS75056817505791+
GWHAAZE00000002CDS75062087506306+
GWHAAZE00000002CDS75064197506541+
GWHAAZE00000002CDS75075447507606+
GWHAAZE00000002CDS75077147507778+
GWHAAZE00000002CDS75079917508100+
GWHAAZE00000002CDS75081887508302+
GWHAAZE00000002CDS75084037508468+
GWHAAZE00000002CDS75093747509484+
GWHAAZE00000002CDS75095887509654+
GWHAAZE00000002CDS75097467509790+
Transcript Sequence

Network for GWHGAAZE005408

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0099


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04791.17LMBR192764.40E-52
PF04791.17LMBR12884871.60E-30
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14617LMBRD1 Vitamin digestion and absorption map04977

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf101.826
SRR3591706second leaf52.509
SRR3591707mature leaf24.970
SRR3591708Shoot apex67.384
SRR3591709Stem69.145
SRR3591710White floral bud54.628
SRR3591711White flower46.163
SRR3591712Green floral bud52.220
SRR3591713Yellow flower45.318
SRP173429 SRR8316895Juvenile bud stage 37.181
SRR8316896Juvenile bud stage 49.216
SRR8316897Juvenile bud stage 26.930
SRR8316894Third green stage 19.164
SRR8316900Third green stage 58.561
SRR8316901Third green stage 49.573
SRR8316898Complete white stage 30.651
SRR8316899Complete white stage 78.724
SRR8316903Complete white stage 42.767
SRR8316902Silver flowering stage25.355
SRR8316904Silver flowering stage40.726
SRR8316905Silver flowering stage18.379
SRR8316906Gold flowering stage 48.427
SRR8316907Gold flowering stage 50.180
SRR8316908Gold flowering stage 52.362
SRP132670SRR6706286Control52.727
SRR6706287Light intensity 50%58.488
SRR6706288Light intensity 20%65.120
CNP0000432CNS0095592Slightly white alabastrum(diploid) 138.839
CNS0095593Slightly white alabastrum(diploid) 244.163
CNS0095594Slightly white alabastrum(diploid) 327.474
CNS0095595Whole white alabastrum(diploid) 231.109
CNS0095596Whole white alabastrum(diploid) 332.889
CNS0095597Whole white alabastrum(diploid) 430.960
CNS0095598Silvery flower (diploied) 135.948
CNS0095599Silvery flower (diploied) 232.224
CNS0095600Silvery flower (diploied) 377.372
CNS0095601Golden flower (diploid) 136.862
CNS0095602Golden flower (diploid) 270.341
CNS0095603Golden flower (diploid) 369.063
CNS0095604Slightly white alabastrum(tetraploid) 145.892
CNS0095605Slightly white alabastrum(tetraploid) 231.501
CNS0095606Slightly white alabastrum(tetraploid) 393.563
CNS0095607Whole white alabastrum(tetraploid) 127.741
CNS0095608Whole white alabastrum(tetraploid) 222.466
CNS0095609Whole white alabastrum(tetraploid) 360.401
CNS0095610Silvery flower (tetraploid) 164.537
CNS0095611Silvery flower (tetraploid) 264.004
CNS0095612Silvery flower (tetraploid) 361.988
CNS0095613Golden flower (tetraploid) 125.769
CNS0095614Golden flower (tetraploid) 250.598
CNS0095615Golden flower (tetraploid) 354.631
CRA001975CRR073297Stem 171.242
CRR073298Stem 261.346
CRR073299Stem 373.191
CRR073300Leaf 181.773
CRR073301Leaf 265.874
CRR073302Leaf 379.464
CRR073303Juvenile bud 199.632
CRR073304Juvenile bud 283.188
CRR073305Juvenile bud 3104.202
CRR073306Third green 157.408
CRR073307Third green 255.918
CRR073308Third green 361.554
CRR073309Second white 155.123
CRR073310Second white 236.004
CRR073311Second white 341.648
CRR073312Silver flowering 144.842
CRR073313Silver flowering 253.127
CRR073314Silver flowering 339.772
CRR073315Gold flowering 121.259
CRR073316Gold flowering 234.420
CRR073317Gold flowering 332.017
CRR073318Tawny withering 184.359
CRR073319Tawny withering 260.233
CRR073320Tawny withering 390.344