Detail information of GWHGAAZE005415


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007026720.16.1362E-142RING/U-box superfamily protein [Theobroma cacao]
trEMBLtr|A0A061ES77|A0A061ES77_THECC2E-142RING/U-box superfamily protein {ECO:0000313|EMBL:EOY07222.1}
TAIR10AT5G01520.14E-86RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene76143207617733+
GWHAAZE00000002mRNA76143207617733+
GWHAAZE00000002exon76143207614381+
GWHAAZE00000002exon76157627615830+
GWHAAZE00000002exon76163727616522+
GWHAAZE00000002exon76166507616716+
GWHAAZE00000002exon76168977617109+
GWHAAZE00000002exon76174747617733+
GWHAAZE00000002CDS76143207614381+
GWHAAZE00000002CDS76157627615830+
GWHAAZE00000002CDS76163727616522+
GWHAAZE00000002CDS76166507616716+
GWHAAZE00000002CDS76168977617109+
GWHAAZE00000002CDS76174747617733+
Transcript Sequence

Network for GWHGAAZE005415

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf8.786
SRR3591706second leaf5.732
SRR3591707mature leaf11.629
SRR3591708Shoot apex3.346
SRR3591709Stem48.319
SRR3591710White floral bud23.287
SRR3591711White flower25.131
SRR3591712Green floral bud10.126
SRR3591713Yellow flower26.830
SRP173429 SRR8316895Juvenile bud stage 4.760
SRR8316896Juvenile bud stage 9.059
SRR8316897Juvenile bud stage 4.288
SRR8316894Third green stage 3.714
SRR8316900Third green stage 8.361
SRR8316901Third green stage 8.793
SRR8316898Complete white stage 9.864
SRR8316899Complete white stage 20.645
SRR8316903Complete white stage 11.908
SRR8316902Silver flowering stage13.309
SRR8316904Silver flowering stage14.989
SRR8316905Silver flowering stage8.111
SRR8316906Gold flowering stage 35.563
SRR8316907Gold flowering stage 32.798
SRR8316908Gold flowering stage 37.924
SRP132670SRR6706286Control3.910
SRR6706287Light intensity 50%4.374
SRR6706288Light intensity 20%3.776
CNP0000432CNS0095592Slightly white alabastrum(diploid) 110.766
CNS0095593Slightly white alabastrum(diploid) 28.545
CNS0095594Slightly white alabastrum(diploid) 38.611
CNS0095595Whole white alabastrum(diploid) 27.921
CNS0095596Whole white alabastrum(diploid) 36.277
CNS0095597Whole white alabastrum(diploid) 45.974
CNS0095598Silvery flower (diploied) 121.466
CNS0095599Silvery flower (diploied) 212.877
CNS0095600Silvery flower (diploied) 321.425
CNS0095601Golden flower (diploid) 119.769
CNS0095602Golden flower (diploid) 226.206
CNS0095603Golden flower (diploid) 325.738
CNS0095604Slightly white alabastrum(tetraploid) 18.857
CNS0095605Slightly white alabastrum(tetraploid) 29.757
CNS0095606Slightly white alabastrum(tetraploid) 313.052
CNS0095607Whole white alabastrum(tetraploid) 17.220
CNS0095608Whole white alabastrum(tetraploid) 27.342
CNS0095609Whole white alabastrum(tetraploid) 310.218
CNS0095610Silvery flower (tetraploid) 140.424
CNS0095611Silvery flower (tetraploid) 236.173
CNS0095612Silvery flower (tetraploid) 323.900
CNS0095613Golden flower (tetraploid) 138.584
CNS0095614Golden flower (tetraploid) 235.009
CNS0095615Golden flower (tetraploid) 366.060
CRA001975CRR073297Stem 17.490
CRR073298Stem 211.279
CRR073299Stem 312.227
CRR073300Leaf 113.511
CRR073301Leaf 212.077
CRR073302Leaf 38.311
CRR073303Juvenile bud 18.520
CRR073304Juvenile bud 26.570
CRR073305Juvenile bud 37.806
CRR073306Third green 14.437
CRR073307Third green 23.994
CRR073308Third green 35.307
CRR073309Second white 114.398
CRR073310Second white 216.835
CRR073311Second white 314.732
CRR073312Silver flowering 113.316
CRR073313Silver flowering 27.065
CRR073314Silver flowering 38.386
CRR073315Gold flowering 111.176
CRR073316Gold flowering 27.864
CRR073317Gold flowering 34.794
CRR073318Tawny withering 112.677
CRR073319Tawny withering 216.457
CRR073320Tawny withering 317.148