Detail information of GWHGAAZE005416


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010262835.12.21783E-56PREDICTED: high mobility group B protein 1-like [Nelumbo nucifera]
Swissprottr|O49595|HMGB1_ARATH6E-47High mobility group B protein 1
trEMBLtr|V7AM07|V7AM07_PHAVU1E-56Uncharacterized protein {ECO:0000313|EMBL:ESW05898.1}
TAIR10AT3G51880.24E-25high mobility group B1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene76192717620233-
GWHAAZE00000002mRNA76192717620233-
GWHAAZE00000002exon76192717619306-
GWHAAZE00000002exon76193977619475-
GWHAAZE00000002exon76195657619662-
GWHAAZE00000002exon76197697619813-
GWHAAZE00000002exon76199307619987-
GWHAAZE00000002exon76200797620233-
GWHAAZE00000002CDS76200797620233-
GWHAAZE00000002CDS76199307619987-
GWHAAZE00000002CDS76197697619813-
GWHAAZE00000002CDS76195657619662-
GWHAAZE00000002CDS76193977619475-
GWHAAZE00000002CDS76192717619306-
Transcript Sequence

Network for GWHGAAZE005416

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00505.20HMG_box411096.60E-24
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyHMG

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf32.250
SRR3591706second leaf55.953
SRR3591707mature leaf174.323
SRR3591708Shoot apex34.469
SRR3591709Stem54.398
SRR3591710White floral bud67.537
SRR3591711White flower105.690
SRR3591712Green floral bud25.748
SRR3591713Yellow flower121.789
SRP173429 SRR8316895Juvenile bud stage 42.335
SRR8316896Juvenile bud stage 63.204
SRR8316897Juvenile bud stage 28.615
SRR8316894Third green stage 17.794
SRR8316900Third green stage 61.926
SRR8316901Third green stage 57.364
SRR8316898Complete white stage 56.677
SRR8316899Complete white stage 119.678
SRR8316903Complete white stage 100.654
SRR8316902Silver flowering stage115.553
SRR8316904Silver flowering stage117.133
SRR8316905Silver flowering stage89.314
SRR8316906Gold flowering stage 201.472
SRR8316907Gold flowering stage 196.595
SRR8316908Gold flowering stage 160.898
SRP132670SRR6706286Control105.172
SRR6706287Light intensity 50%86.454
SRR6706288Light intensity 20%83.839
CNP0000432CNS0095592Slightly white alabastrum(diploid) 154.955
CNS0095593Slightly white alabastrum(diploid) 249.135
CNS0095594Slightly white alabastrum(diploid) 355.849
CNS0095595Whole white alabastrum(diploid) 249.215
CNS0095596Whole white alabastrum(diploid) 342.428
CNS0095597Whole white alabastrum(diploid) 441.023
CNS0095598Silvery flower (diploied) 1183.100
CNS0095599Silvery flower (diploied) 2158.818
CNS0095600Silvery flower (diploied) 3176.985
CNS0095601Golden flower (diploid) 1174.406
CNS0095602Golden flower (diploid) 2156.211
CNS0095603Golden flower (diploid) 3151.022
CNS0095604Slightly white alabastrum(tetraploid) 126.943
CNS0095605Slightly white alabastrum(tetraploid) 231.803
CNS0095606Slightly white alabastrum(tetraploid) 331.552
CNS0095607Whole white alabastrum(tetraploid) 121.533
CNS0095608Whole white alabastrum(tetraploid) 230.395
CNS0095609Whole white alabastrum(tetraploid) 344.720
CNS0095610Silvery flower (tetraploid) 1196.421
CNS0095611Silvery flower (tetraploid) 2160.534
CNS0095612Silvery flower (tetraploid) 3118.481
CNS0095613Golden flower (tetraploid) 1216.774
CNS0095614Golden flower (tetraploid) 2211.795
CNS0095615Golden flower (tetraploid) 3159.257
CRA001975CRR073297Stem 165.079
CRR073298Stem 271.836
CRR073299Stem 357.867
CRR073300Leaf 174.245
CRR073301Leaf 294.044
CRR073302Leaf 373.030
CRR073303Juvenile bud 191.422
CRR073304Juvenile bud 288.463
CRR073305Juvenile bud 382.330
CRR073306Third green 157.420
CRR073307Third green 281.913
CRR073308Third green 365.382
CRR073309Second white 169.926
CRR073310Second white 284.564
CRR073311Second white 368.623
CRR073312Silver flowering 171.720
CRR073313Silver flowering 238.682
CRR073314Silver flowering 349.913
CRR073315Gold flowering 175.711
CRR073316Gold flowering 272.594
CRR073317Gold flowering 355.471
CRR073318Tawny withering 168.309
CRR073319Tawny withering 278.154
CRR073320Tawny withering 353.356