Gene detail

Detail information of GWHGAAZE005417

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009804550.1	2.1384E-179	PREDICTED: chlorophyll a-b binding protein CP29.1, chloroplastic-like [Nicotiana sylvestris]
Swissprot	tr\|Q9XF88\|CB4B_ARATH	1E-171	Chlorophyll a-b binding protein CP29.2, chloroplastic (Precursor)
trEMBL	tr\|B9SQ36\|B9SQ36_RICCO	1E-178	Chlorophyll A/B binding protein, putative {ECO:0000313\|EMBL:EEF34284.1}
TAIR10	AT3G08940.2	1E-130	light harvesting complex photosystem II

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	7624125	7625844	+
GWHAAZE00000002	mRNA	7624125	7625844	+
GWHAAZE00000002	exon	7624125	7624637	+
GWHAAZE00000002	exon	7625485	7625844	+
GWHAAZE00000002	CDS	7624125	7624637	+
GWHAAZE00000002	CDS	7625485	7625844	+

Transcript Sequence
>GWHTAAZE005423 ATGGCCGCCGCCGCCACAGCTGCAACATCCTCTTTCATAGGAACACGCCTACCGGAAGTGCACTCAAACTCGGCCCGGGTTCAAGCCCAGTTCAAGGTTCAAGCCCGGTTCGGGTTCGGAAAGAAAAAGGCAGCACCCAAGAAGGCGTCCAAGACAGTGCCGGATCGCCCGCTCTGGTTCCCAGGAGCCAAGGCGCCCGAGTATCTGGACGGGACATTGGTAGGGGATTACGGGTTTGACCCGTTTGGTTTGGGGAAACCCGCGGAGTACTTACAGTTTGATTTGGACTCGTTGGACCAGAACTTGGCCAAGAATTTGGCGGGTGATGTGATTGGGACCCGGTTCGAGGATGCGGATGTGAAGTCGACGCCGTTTCAGCCGTACAGTGAGGTTTTTGGGCTGCAAAGGTTCCGTGAGTGTGAGCTCATTCATGGAAGGTGGGCCATGTTGGCTACACTTGGTGCTTTGGCTGTTGAGTCTCTCACTGGTATTACATGGCAGGATGCCGGCAAGGTTGAATTAATTGAAGGATCGACATACCTAGGCCAACCACTCCCATTCTCCATCACCACATTGATATGGATTGAAGTGCTGGTGATCGGGTACATTGAGTTCCAAAGGAATGCAGAGCTTGACCCGGAAAAGAGGCTGTACCCAGGTGGCAAATACTTCGACCCCCTCGGTTTAGCCGCTGACCCAGAGAAGAAGGCCGTCCTTCAACTAGCCGAAATCAAGCATGCCCGCCTCGCAATGGTGGCCTTCCTCGGGTTTGCCGTGCAGGCAGCCGCCACTGGCAAGGGCCCACTCAACAACTGGGCTACCCATTTGAGTGACCCGCTCCACACCACCATTATTGACACTTTTACTTCTTGA

Network for GWHGAAZE005417

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00504.22	Chloroa_b-bind	65	261	3.90E-50

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08915	LHCB4	Metabolic pathways	map01100
K08915	LHCB4	Photosynthesis - antenna proteins	map00196

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1231.548
	SRR3591706	second leaf	5384.969
	SRR3591707	mature leaf	4799.101
	SRR3591708	Shoot apex	2218.416
	SRR3591709	Stem	993.870
	SRR3591710	White floral bud	151.866
	SRR3591711	White flower	188.159
	SRR3591712	Green floral bud	97.554
	SRR3591713	Yellow flower	99.660
SRP173429	SRR8316895	Juvenile bud stage	368.743
	SRR8316896	Juvenile bud stage	305.789
	SRR8316897	Juvenile bud stage	216.547
	SRR8316894	Third green stage	82.135
	SRR8316900	Third green stage	146.613
	SRR8316901	Third green stage	133.536
	SRR8316898	Complete white stage	48.053
	SRR8316899	Complete white stage	115.361
	SRR8316903	Complete white stage	82.676
	SRR8316902	Silver flowering stage	47.156
	SRR8316904	Silver flowering stage	44.472
	SRR8316905	Silver flowering stage	23.884
	SRR8316906	Gold flowering stage	88.329
	SRR8316907	Gold flowering stage	107.743
	SRR8316908	Gold flowering stage	85.788
SRP132670	SRR6706286	Control	247.953
	SRR6706287	Light intensity 50%	143.073
	SRR6706288	Light intensity 20%	127.594
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	354.906
	CNS0095593	Slightly white alabastrum(diploid) 2	230.873
	CNS0095594	Slightly white alabastrum(diploid) 3	282.511
	CNS0095595	Whole white alabastrum(diploid) 2	163.637
	CNS0095596	Whole white alabastrum(diploid) 3	157.006
	CNS0095597	Whole white alabastrum(diploid) 4	100.938
	CNS0095598	Silvery flower (diploied) 1	741.075
	CNS0095599	Silvery flower (diploied) 2	632.582
	CNS0095600	Silvery flower (diploied) 3	279.250
	CNS0095601	Golden flower (diploid) 1	813.117
	CNS0095602	Golden flower (diploid) 2	557.118
	CNS0095603	Golden flower (diploid) 3	519.460
	CNS0095604	Slightly white alabastrum(tetraploid) 1	359.377
	CNS0095605	Slightly white alabastrum(tetraploid) 2	384.285
	CNS0095606	Slightly white alabastrum(tetraploid) 3	570.932
	CNS0095607	Whole white alabastrum(tetraploid) 1	216.487
	CNS0095608	Whole white alabastrum(tetraploid) 2	135.364
	CNS0095609	Whole white alabastrum(tetraploid) 3	290.160
	CNS0095610	Silvery flower (tetraploid) 1	330.485
	CNS0095611	Silvery flower (tetraploid) 2	609.072
	CNS0095612	Silvery flower (tetraploid) 3	228.446
	CNS0095613	Golden flower (tetraploid) 1	256.590
	CNS0095614	Golden flower (tetraploid) 2	410.304
	CNS0095615	Golden flower (tetraploid) 3	324.663
CRA001975	CRR073297	Stem 1	521.353
	CRR073298	Stem 2	438.413
	CRR073299	Stem 3	762.579
	CRR073300	Leaf 1	102.763
	CRR073301	Leaf 2	140.389
	CRR073302	Leaf 3	156.414
	CRR073303	Juvenile bud 1	91.049
	CRR073304	Juvenile bud 2	100.792
	CRR073305	Juvenile bud 3	148.404
	CRR073306	Third green 1	61.947
	CRR073307	Third green 2	71.810
	CRR073308	Third green 3	65.725
	CRR073309	Second white 1	89.352
	CRR073310	Second white 2	50.737
	CRR073311	Second white 3	55.031
	CRR073312	Silver flowering 1	69.072
	CRR073313	Silver flowering 2	79.932
	CRR073314	Silver flowering 3	59.386
	CRR073315	Gold flowering 1	3866.899
	CRR073316	Gold flowering 2	3354.467
	CRR073317	Gold flowering 3	4301.691
	CRR073318	Tawny withering 1	490.672
	CRR073319	Tawny withering 2	351.850
	CRR073320	Tawny withering 3	470.683