Gene detail

Detail information of GWHGAAZE005428

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009786415.1	3.2164E-172	PREDICTED: E3 ubiquitin-protein ligase Hakai [Nicotiana sylvestris]
trEMBL	tr\|A0A068UD82\|A0A068UD82_COFCA	2E-156	Coffea canephora DH200=94 genomic scaffold, scaffold_22 {ECO:0000313\|EMBL:CDP06525.1}
TAIR10	AT5G01160.1	9E-82	RING/U-box superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	7810233	7813678	+
GWHAAZE00000002	mRNA	7810233	7813678	+
GWHAAZE00000002	exon	7810233	7810366	+
GWHAAZE00000002	exon	7811559	7811853	+
GWHAAZE00000002	exon	7812525	7812583	+
GWHAAZE00000002	exon	7812679	7813678	+
GWHAAZE00000002	CDS	7810233	7810366	+
GWHAAZE00000002	CDS	7811559	7811853	+
GWHAAZE00000002	CDS	7812525	7812583	+
GWHAAZE00000002	CDS	7812679	7813678	+

Transcript Sequence
>GWHTAAZE005434 CTCTTCTCTCTGGCTCTCTCCCTACAAGCACACCTCAATCGTCTTTCTCCCTTCGGATCGTCTCTCTCCCTCCAACAAAATCCGACCGTCTCTCTGGCCTCGGCTGCGCGCCTACACAACCGATCATCTCTCCTGTCAAATAGCGAGGGACAGGATAATAGTTGGGGAAAGATGCTTCAGATCAGGCTTAGCACAGTTCCACCTTCAGAAGGTGGTGGAGGAGGGGCAAAGCCCTCGCAAATGGAGAGTGTGACTGTTGCATGCCCAGACCACCTTGTCCTTGCTGATCTTCCTGTAGCCAAGAGCCTTGGTTCTGCGATTGCTGCTTCCCATGTCAAGACTGTAGGGCGTAGGTCACGCCGCCAGCTTGGTGAGAGAGTTCATTTTTGTGTCCGCTGTGATTTCCCCATCGCTATCTATGGACGGCTGAGCCCTTGTGAGCATGCTTTCTGTCTGGATTGTGCCAGGAGTGACTCTCTCTGTTATCTCTGTGATGAACGCATTCAGAAGATTCAGACAATCAAATTGATGGAAGGGATCTTTATCTGCGCAGCCCCCCACTGTCTCAAGTCGTTTCTAAAGAAGACAGAATTTGAGTCTCATATTCACATTACCCATCCCGACCTTCTTGGTCACAATACGAAGAAAGACGTAACCGAGGCAGAAGTACGAAAACCCACAGCTTCAGATTCTACAGTTCAAGCTCCACTAAGGGCAGTCTTATCACCAAGTTCAAATTCGCAAATTCATGATCGTGAAGACTACAAGTCTCACCGAAGAGAGCAACCACCGACCAGGGTAGTCATACAGCCAAAGTCAACCCCTGCCCTTTATGGGCAAAGTCAAAATCATGTGGACCCACAACCTGGCAACAACAGAGCCCAAAGCTTTGATGGGCCCAGCCCCCAGAACCGCTTTCCTCAGCAGAGTTTTGACACACAACCTCCTAATTATGCAGTGCCAGTTAATTCAAATTTTGCTCTGGCTCCTCCTCCTTTTGGTTACCCTCCTTTTGCACCCAATGGGCCACAACCATTTTACGGTTCACCCTTTGAGATGATGCGGCCAGAGTCAGCACCAGAAGGCGGATCAGAACAAGGGTCGGTTTTGGGTTTCCCACCAGGTCCAGCTGGGGGGATGAATTTTTCAGAAAATTATCCTCGGGGGCCGTGGAATATTGGACCGAATGGCATGCATTCTGAATCTGCCCCTCCCATGGTTCAAACAGATTCTCAAGGAGGAGTTGCATTGTTTCAAGGGGATTATGGACAAAATCAAGGAGTTTTGCCTTCACCCAATAGTGGAAATGCTATGGATCCCAAGGGTATTTTGGCACCACAGCCTTTTGCACCGCCTCCGCCTCCTCCCCATTTGGCACACGTTAAACGAGGCAATTTCTACCCTGGTGACATGGTGGCCCATGATGGACAAGGTGGCTTTGGGTGGCAGCATGAGAAGCGAGATAGCTTTGGCAGTGGGCAGGATTAA

Network for GWHGAAZE005428

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING
Ubiquitin Family	U-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	47.308
	SRR3591706	second leaf	37.299
	SRR3591707	mature leaf	41.966
	SRR3591708	Shoot apex	57.377
	SRR3591709	Stem	54.753
	SRR3591710	White floral bud	70.711
	SRR3591711	White flower	83.785
	SRR3591712	Green floral bud	56.395
	SRR3591713	Yellow flower	71.217
SRP173429	SRR8316895	Juvenile bud stage	25.518
	SRR8316896	Juvenile bud stage	33.555
	SRR8316897	Juvenile bud stage	16.865
	SRR8316894	Third green stage	18.114
	SRR8316900	Third green stage	51.987
	SRR8316901	Third green stage	54.720
	SRR8316898	Complete white stage	25.016
	SRR8316899	Complete white stage	72.805
	SRR8316903	Complete white stage	43.550
	SRR8316902	Silver flowering stage	28.997
	SRR8316904	Silver flowering stage	38.049
	SRR8316905	Silver flowering stage	20.281
	SRR8316906	Gold flowering stage	62.182
	SRR8316907	Gold flowering stage	65.718
	SRR8316908	Gold flowering stage	68.604
SRP132670	SRR6706286	Control	58.226
	SRR6706287	Light intensity 50%	60.424
	SRR6706288	Light intensity 20%	60.181
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	20.075
	CNS0095593	Slightly white alabastrum(diploid) 2	25.379
	CNS0095594	Slightly white alabastrum(diploid) 3	20.316
	CNS0095595	Whole white alabastrum(diploid) 2	21.687
	CNS0095596	Whole white alabastrum(diploid) 3	21.276
	CNS0095597	Whole white alabastrum(diploid) 4	21.972
	CNS0095598	Silvery flower (diploied) 1	29.834
	CNS0095599	Silvery flower (diploied) 2	28.023
	CNS0095600	Silvery flower (diploied) 3	56.169
	CNS0095601	Golden flower (diploid) 1	33.084
	CNS0095602	Golden flower (diploid) 2	53.059
	CNS0095603	Golden flower (diploid) 3	48.520
	CNS0095604	Slightly white alabastrum(tetraploid) 1	27.703
	CNS0095605	Slightly white alabastrum(tetraploid) 2	22.209
	CNS0095606	Slightly white alabastrum(tetraploid) 3	53.004
	CNS0095607	Whole white alabastrum(tetraploid) 1	17.148
	CNS0095608	Whole white alabastrum(tetraploid) 2	17.514
	CNS0095609	Whole white alabastrum(tetraploid) 3	32.756
	CNS0095610	Silvery flower (tetraploid) 1	49.033
	CNS0095611	Silvery flower (tetraploid) 2	48.863
	CNS0095612	Silvery flower (tetraploid) 3	57.587
	CNS0095613	Golden flower (tetraploid) 1	26.258
	CNS0095614	Golden flower (tetraploid) 2	45.402
	CNS0095615	Golden flower (tetraploid) 3	60.004
CRA001975	CRR073297	Stem 1	45.247
	CRR073298	Stem 2	41.726
	CRR073299	Stem 3	42.061
	CRR073300	Leaf 1	50.675
	CRR073301	Leaf 2	49.134
	CRR073302	Leaf 3	36.150
	CRR073303	Juvenile bud 1	37.197
	CRR073304	Juvenile bud 2	44.071
	CRR073305	Juvenile bud 3	54.250
	CRR073306	Third green 1	35.942
	CRR073307	Third green 2	29.683
	CRR073308	Third green 3	31.426
	CRR073309	Second white 1	40.468
	CRR073310	Second white 2	35.134
	CRR073311	Second white 3	35.777
	CRR073312	Silver flowering 1	46.099
	CRR073313	Silver flowering 2	56.978
	CRR073314	Silver flowering 3	49.582
	CRR073315	Gold flowering 1	16.859
	CRR073316	Gold flowering 2	25.590
	CRR073317	Gold flowering 3	20.920
	CRR073318	Tawny withering 1	34.770
	CRR073319	Tawny withering 2	34.944
	CRR073320	Tawny withering 3	33.100