Gene detail

Detail information of GWHGAAZE005442

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010654198.1	0	PREDICTED: mitogen-activated protein kinase-binding protein 1 isoform X1 [Vitis vinifera]
Swissprot	tr\|P25387\|GBLP_CHLRE	0.0000006	Guanine nucleotide-binding protein subunit beta-like protein
trEMBL	tr\|F6HKX4\|F6HKX4_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB55516.1}
TAIR10	AT3G09080.1	2E-162	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	7969562	7977984	+
GWHAAZE00000002	mRNA	7969562	7977984	+
GWHAAZE00000002	exon	7969562	7969639	+
GWHAAZE00000002	exon	7969738	7969956	+
GWHAAZE00000002	exon	7971327	7971435	+
GWHAAZE00000002	exon	7971570	7971977	+
GWHAAZE00000002	exon	7972069	7972172	+
GWHAAZE00000002	exon	7972276	7972534	+
GWHAAZE00000002	exon	7972692	7972747	+
GWHAAZE00000002	exon	7972897	7973158	+
GWHAAZE00000002	exon	7973259	7973422	+
GWHAAZE00000002	exon	7973518	7973660	+
GWHAAZE00000002	exon	7973754	7973855	+
GWHAAZE00000002	exon	7974111	7974249	+
GWHAAZE00000002	exon	7974377	7974463	+
GWHAAZE00000002	exon	7974543	7974698	+
GWHAAZE00000002	exon	7975338	7975697	+
GWHAAZE00000002	exon	7975983	7976149	+
GWHAAZE00000002	exon	7976232	7976373	+
GWHAAZE00000002	exon	7976446	7976805	+
GWHAAZE00000002	exon	7977529	7977984	+
GWHAAZE00000002	five_prime_UTR	7969562	7969591	+
GWHAAZE00000002	CDS	7969592	7969639	+
GWHAAZE00000002	CDS	7969738	7969956	+
GWHAAZE00000002	CDS	7971327	7971435	+
GWHAAZE00000002	CDS	7971570	7971977	+
GWHAAZE00000002	CDS	7972069	7972172	+
GWHAAZE00000002	CDS	7972276	7972534	+
GWHAAZE00000002	CDS	7972692	7972747	+
GWHAAZE00000002	CDS	7972897	7973158	+
GWHAAZE00000002	CDS	7973259	7973422	+
GWHAAZE00000002	CDS	7973518	7973660	+
GWHAAZE00000002	CDS	7973754	7973855	+
GWHAAZE00000002	CDS	7974111	7974249	+
GWHAAZE00000002	CDS	7974377	7974463	+
GWHAAZE00000002	CDS	7974543	7974698	+
GWHAAZE00000002	CDS	7975338	7975697	+
GWHAAZE00000002	CDS	7975983	7976149	+
GWHAAZE00000002	CDS	7976232	7976373	+
GWHAAZE00000002	CDS	7976446	7976805	+
GWHAAZE00000002	CDS	7977529	7977984	+

Transcript Sequence
>GWHTAAZE005450 GCAAAACCTTGTTGAGATTTGAATTGAAATATGAAAAACAATCGCAAACTCAAGAAGAAACCACATATACCTTCCAAGTTGATTTTGGAAGAGATAATCGGTTCAACAACAAAGAATTCTAATGGATTGGCTTCCAGTATTTCGAATTCCAGCTTTGTTTATATGGCTGGCTGTGTTGTAGTGGTTTACAATGCGAATTCGGGGACTCAGTTACATCTCATGGTCTCTAACCGATTGCCAAAACCTTTGAGCTGCGTTGCCATCTCAATGAGCGGAAATCTGGTCGCGGCTGGAGAGTCAGGGAATCAACCTGCAGCACTAGTGTGGGACTGTGAATCTTTGGCTTCAGCATCTGAATTAAAAGGCCATCAATATGGTGTAACATGCATGGCTTTCTCTCCCGATGATTCTACTTCACTGTATTTTAGTTCTTCAGGGAAACATCTGGTCTCTGTTGGATTCCCTCGTGATGGATACCTTTGCCTTTGGGATTGGCGAAGTAGGACGTTACTTACAAAGCTTAGAGCATGTTCATCTTGTTCTCCTGCTGCATCGGTCTGCTTCTCAGCAGATGCAAAATTCATTGCTACTGCTGGGAAAAAGCACTTGAAGATTTGGACAGTTAAATCATCCACAAGGTCTCAAGCTAAAACTGGGCTGGGGTCACTTACAGTGCATGCGAAGCCAGTTAATCTTGGTCATCTCAAAGGATGCTCATTTATATCTGTCACATCTCCCATATTGATTAGTTGCAGTCCCGTTCATTGCAATCGGGCTGGTGAATTTTTACCCATCTATGCACTGACAGATTCAGGTGTTTTATGTCTTCTGAGCTCTGGGTTGACTGTTACGAATTCAGTGGACTTAAAGGTAGATGTGATTCTTGTTATCCTATTATACACTCTTAAAATGTACCAGATTTATAATCAGGTTGAAAAAGGTTTTGCAATATCTGCATCAAGAACGTTGGTTGCTTGTGCATGCGATAATGGGCTGGTCGAATTGTTCACCGTCGATTCTCTTAAATATGCTGGAAGCTTACAACATACTGAAGCCAAAACATGCAACAAGGTGAATGATATAGGCTGCCATGAAAAAGTCTGTGAAAATGAATTTCTGCCATTGCCTAAACAACCTAATGCAGTTGCTTGTCAATTCTCCACTCCAGAAAAGCTTGTGGTTATTTATGGTGACCACAGTCTCTACATATGGGATATTCATGATGGATACAAGGCTACCAAGTGTTGTGTGCTAGTTTCACATAGTGCATGCATATGGGATATTAAGAATCTTTCATGTGAAAACATGCATGATCCTTCTCTTGCATGTGTTGCCAGAGGTTGTACCGGTGGCGTTTCCTTTGCAACATGTTCAATTGATGGTACTATTAGGTTATGGGATCTCGCTTTGCAACCTTTTTTATACGAGGATAGCTTCTCTCAGACCAAAGGCCACTCTATTGCGATTACGGAGCCAGTTGCCACCACTTGTTTAGTAAGTGCTGGGATTTTTGAACGCGAGTCAGTGGTGTCAGGTGTTAGTACTCCAGGGTTTAGAGTGATGGCAGTTAGTTCTGATGGCAATCATCTGGCTGCTGGTGATTGGGCCGGAAACCTCCATATCTATAACTTACAGACACCTGACTATATGTGTATAAAGGATGCTCACAATGAAGAAATTTTGTCACTGAGCTTTAGTTCGCCAGTCAAGAAAAGTGCTTTTCTTGAACAAGTTATAGAAAGCCATTACTTCCTTGCTTCAGGAGGAAAGGATCGAAAGATCCATCTTTACGATGTGGAAAGGAATTTTGCTCTCATTGGAACTGTTGAAGATCATTCAGCTCCAGTGATTTCTGTAAAACTCTCTGCCAATGGTTGTAAAATTCTCAGTTGCAGAGCTGACACATCTCTGGTGTTTTATGATGTGGCTGCAACAGAAAATGCTTGCAATATATCTCGTTGTTATCATCAACTGACAACTCAGGGAACTATATATGGTATGGCCGTAGATCCAACGATGGAGGCTGGTGTCACTGTGGGACAGGATAAGAAGGTAAACATATTCAATGTTGCTGCTGGGAAACTAATTAGATCATTCAAGCAAGATGGAGATTTGAAGGACCCGATAAGAGTATGTATGGACCCAAGCAGGAGCTATATGGTCTGCTCTTACTCTAACAAGACTATCTGCATGTACGACTTTATGACTGGGGAGATGGTTGCACGAGCAGTTGGGCATGGTGAAGTTACAACTGGTGTCATCTTCTTACCTGATTGCAAGCACTTAGTTGGTCGTGATGGTTGTATTTTTGTTTGGAAAGTCCCCACTCCACTGTCTTCAAGGATGCTGCAAAAAATTAAGGAAAATTGTTGTCCGTTGTCCCCAAATATCATGGTTCAGCCGGCAGCTGTATGCCAGATCAAATTTCATGGAGAAGATGACCACCTATGCAAAACCAATCCAAATAATGTGGACGTGGTGGAAAATTCCAACCAAGTCAGTCGAAGACGACTGTGTTGTGAAGGTGGGGGTCTTCAAGAGACCTCAACCTTCAAATTTAGCATTTCTAGACTTCCAAAGTGGGCGCAAGCCAAAGTTACTACCTCCAAGGTCATTCCAGCAGACCCTGAATTCACTTCATCTCAGCCAGCTAGACTTCAATCTTTTCTGCACTTGGATGTTGATCCTGAATCACATACTACGCCATCTAAAAATGATTCTGAAGGCAGTAAGCAATTTTGTGGGACCATGTCCAGAAGTGCAGTCCATAGGGAAAACAGCCAAAGTTCTCCAATGACTCAAGAAATTTGTAGGACCTTTGCATTGGACAAGCGTTGGCATACTATTCACACAGTGTGTTTGGATCTGCTAAATTCCCCTGAGGTTTGGGATATGAAGGGAATGAAGGTGCCGCTGCCCTTTTCAAATATGTGTAAGGGAAAACATTGTACGTCTCACAAGATACTTCTGTGGAGGCAAGAAGTGATTCAAAGTGCATTAAGCTCTAGTGAGAATATTTCTTCAGTGGAGCCCACCATTCCCTTCGTTAACTGTGTGGATGGGCAGGGTGCTGATTTAACTGATTGTACCAGATTGAATAATAATTATGTCCTGTTGTGCAATGGCAACGATCAACTGCGTATAATTAATACTCATGAATGCCATGAGGAAGTTCGTGAGGTGTCAGAAGAAATGCAGTCAGAAACAGATGAGAGCAGGTCTCAAAGAACAATGGATATTTTTTCATCCAACATGAAGTCTCAAGAAAATGACATGCTTGACCTAGACTTGGACAATTCATCAGCGCAACTGAAGGGTAAAAAGAAGACACATAAATTCTCTCCTAGCGAGTCAACTGGATCATCATCTGCTACAAATAAGGTTGAGAACTCGGAAGTAATTAATGCCAGAGGCCAAGAGGAATGTGATGTTGAGGAAACTTTCATTGCGTGCAGAGAAGCATTATTAAATTTGGATGCTGCAACCGAGAGTGCACTCGGGATATTTTTGATATTAGGAAAAAAGCTGGTGTCTAGAGAAGAGGTAACAAGGGGGGCTGAAGCTCGGCTATATGCTGAGGCCAGTGCAATGCTACCGTCAATAGCAAAGAAAGTTCAAGCAGTTGCAAAATTGGCACAATATAACTTGAACAATCCTGGTGGGGAAATGGGAGTGGACCTTTCGGGTTTTGAACCGTTGTTGGGAACATTTGCTGAGAGTCTATCACAAAGGGTGGTTGAAGTAGTGAAGAAGAATTTCAGTACTCTTTAA

Network for GWHGAAZE005442

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	109	154	0.0036
PF00400.33	WD40	175	196	0.09

Protein Sequence

>GWHPAAZE005446
MKNNRKLKKKPHIPSKLILEEIIGSTTKNSNGLASSISNSSFVYMAGCVVVVYNANSGTQLHLMVSNRLPKPLSCVAISMSGNLVAAGESGNQPAALVWDCESLASASELKGHQYGVTCMAFSPDDSTSLYFSSSGKHLVSVGFPRDGYLCLWDWRSRTLLTKLRACSSCSPAASVCFSADAKFIATAGKKHLKIWTVKSSTRSQAKTGLGSLTVHAKPVNLGHLKGCSFISVTSPILISCSPVHCNRAGEFLPIYALTDSGVLCLLSSGLTVTNSVDLKVDVILVILLYTLKMYQIYNQVEKGFAISASRTLVACACDNGLVELFTVDSLKYAGSLQHTEAKTCNKVNDIGCHEKVCENEFLPLPKQPNAVACQFSTPEKLVVIYGDHSLYIWDIHDGYKATKCCVLVSHSACIWDIKNLSCENMHDPSLACVARGCTGGVSFATCSIDGTIRLWDLALQPFLYEDSFSQTKGHSIAITEPVATTCLVSAGIFERESVVSGVSTPGFRVMAVSSDGNHLAAGDWAGNLHIYNLQTPDYMCIKDAHNEEILSLSFSSPVKKSAFLEQVIESHYFLASGGKDRKIHLYDVERNFALIGTVEDHSAPVISVKLSANGCKILSCRADTSLVFYDVAATENACNISRCYHQLTTQGTIYGMAVDPTMEAGVTVGQDKKVNIFNVAAGKLIRSFKQDGDLKDPIRVCMDPSRSYMVCSYSNKTICMYDFMTGEMVARAVGHGEVTTGVIFLPDCKHLVGRDGCIFVWKVPTPLSSRMLQKIKENCCPLSPNIMVQPAAVCQIKFHGEDDHLCKTNPNNVDVVENSNQVSRRRLCCEGGGLQETSTFKFSISRLPKWAQAKVTTSKVIPADPEFTSSQPARLQSFLHLDVDPESHTTPSKNDSEGSKQFCGTMSRSAVHRENSQSSPMTQEICRTFALDKRWHTIHTVCLDLLNSPEVWDMKGMKVPLPFSNMCKGKHCTSHKILLWRQEVIQSALSSSENISSVEPTIPFVNCVDGQGADLTDCTRLNNNYVLLCNGNDQLRIINTHECHEEVREVSEEMQSETDESRSQRTMDIFSSNMKSQENDMLDLDLDNSSAQLKGKKKTHKFSPSESTGSSSATNKVENSEVINARGQEECDVEETFIACREALLNLDAATESALGIFLILGKKLVSREEVTRGAEARLYAEASAMLPSIAKKVQAVAKLAQYNLNNPGGEMGVDLSGFEPLLGTFAESLSQRVVEVVKKNFSTL

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.572
	SRR3591706	second leaf	0.597
	SRR3591707	mature leaf	0.092
	SRR3591708	Shoot apex	12.820
	SRR3591709	Stem	2.642
	SRR3591710	White floral bud	0.290
	SRR3591711	White flower	0.560
	SRR3591712	Green floral bud	0.557
	SRR3591713	Yellow flower	0.080
SRP173429	SRR8316895	Juvenile bud stage	0.515
	SRR8316896	Juvenile bud stage	0.572
	SRR8316897	Juvenile bud stage	0.233
	SRR8316894	Third green stage	0.193
	SRR8316900	Third green stage	0.257
	SRR8316901	Third green stage	0.108
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.190
	SRR8316903	Complete white stage	0.046
	SRR8316902	Silver flowering stage	0.097
	SRR8316904	Silver flowering stage	0.103
	SRR8316905	Silver flowering stage	0.018
	SRR8316906	Gold flowering stage	0.075
	SRR8316907	Gold flowering stage	0.092
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.172
	SRR6706287	Light intensity 50%	0.245
	SRR6706288	Light intensity 20%	0.369
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.307
	CNS0095593	Slightly white alabastrum(diploid) 2	0.259
	CNS0095594	Slightly white alabastrum(diploid) 3	0.360
	CNS0095595	Whole white alabastrum(diploid) 2	0.301
	CNS0095596	Whole white alabastrum(diploid) 3	0.154
	CNS0095597	Whole white alabastrum(diploid) 4	0.132
	CNS0095598	Silvery flower (diploied) 1	0.524
	CNS0095599	Silvery flower (diploied) 2	0.203
	CNS0095600	Silvery flower (diploied) 3	0.081
	CNS0095601	Golden flower (diploid) 1	0.213
	CNS0095602	Golden flower (diploid) 2	0.295
	CNS0095603	Golden flower (diploid) 3	0.122
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.647
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.227
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.832
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.404
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.177
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.167
	CNS0095610	Silvery flower (tetraploid) 1	0.221
	CNS0095611	Silvery flower (tetraploid) 2	0.202
	CNS0095612	Silvery flower (tetraploid) 3	0.126
	CNS0095613	Golden flower (tetraploid) 1	0.111
	CNS0095614	Golden flower (tetraploid) 2	0.103
	CNS0095615	Golden flower (tetraploid) 3	0.049
CRA001975	CRR073297	Stem 1	0.783
	CRR073298	Stem 2	0.502
	CRR073299	Stem 3	0.235
	CRR073300	Leaf 1	0.166
	CRR073301	Leaf 2	0.132
	CRR073302	Leaf 3	0.033
	CRR073303	Juvenile bud 1	0.021
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.023
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.028
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.046
	CRR073316	Gold flowering 2	0.207
	CRR073317	Gold flowering 3	0.001
	CRR073318	Tawny withering 1	1.104
	CRR073319	Tawny withering 2	0.343
	CRR073320	Tawny withering 3	0.632