Gene detail

Detail information of GWHGAAZE005452

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	ACR09748.1	0	DIV3B protein [Heptacodium miconioides]
Swissprot	tr\|Q8S9H7\|DIV_ANTMA	9E-118	Transcription factor DIVARICATA
trEMBL	tr\|C5I9W4\|C5I9W4_9DIPS	0	DIV3B protein {ECO:0000313\|EMBL:ACR09748.1}
TAIR10	AT2G38090.1	1E-79	Duplicated homeodomain-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	8078927	8080106	+
GWHAAZE00000002	mRNA	8078927	8080106	+
GWHAAZE00000002	exon	8078927	8079342	+
GWHAAZE00000002	exon	8079596	8080106	+
GWHAAZE00000002	CDS	8078927	8079342	+
GWHAAZE00000002	CDS	8079596	8080106	+

Transcript Sequence
>GWHTAAZE005460 ATGGAAATCTTCTCTCCAGCATCATATCTTCCCACCTCGAATTGGTTGTTTGAGGAAAGCAAGGAAACGAAATGGACCACCGAAGAAAACAAGCGATTTGAAAACGCACTTGCGTTATTCGACAAGGACACGCCGGATCGATGGTACAATGTGGCGGCCATGATCCCGGGGAAGACTGTTAGGGATGTGATCAAACAGTATAGGGAATTGGAAGAAGATGTTAGTGATATCGAGGCTGGGCTAATACCAATACCTGGTTACACTACTGGTGATTCTTTCACATTAGAGTGGCTGAACAATCAAGAATTTCATGGTTTGAAACAATTCTACGCTCCAGGCGCAAAGCGGAGTTTATCAACTAGGCCTTCTGATCAAGAAAGGAAGAAAGGTGTTCCATGGACAGAGGAAGAGCACAGGCAATTTTTGCTGGGGCTTAAAAAGTACGGGAAAGGAGACTGGCGAAATATATCTCGTAATTATGTGACAACCAGGACCCCAACTCAGGTTGCTAGTCATGCTCAGAAGTACTACATCAGGCAGCTTTCTGGAGGAAAGGATAAGAGGAGGTCAAGCATCCACGATATCACAACCGTTAATCTCGTGGACTCCAAATCTCCCTTACCAGATAATAATAAACCGACTTCACCGGTTCACTCCACTGCGGTTATACAACAGCAAACGCAGCTGCAGCAACACTCAAATACGAGTGGCATGGTCAAGGCACTATATGATTGGGGTGGTCCAAATCAAGGAACAACCATGGCTTTTGATTTGCTAAATAGCAGCCTTATGATGTCGTCTCCTCGTGGGACCCCTTCATATGGAATGAAAATGCAGGAACATAACCTGCGGAGAGGCAATCTTCAAGGACTCGACTATGGACCTTACAATACGATTTTTCAGATGCAATTCACACAGCCTAGGTAA

Network for GWHGAAZE005452

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	24	69	5.90E-06
PF00249.32	Myb_DNA-binding	132	176	4.10E-12

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.124
	SRR3591706	second leaf	6.933
	SRR3591707	mature leaf	6.384
	SRR3591708	Shoot apex	1.873
	SRR3591709	Stem	4.467
	SRR3591710	White floral bud	9.696
	SRR3591711	White flower	3.080
	SRR3591712	Green floral bud	25.300
	SRR3591713	Yellow flower	0.568
SRP173429	SRR8316895	Juvenile bud stage	2.154
	SRR8316896	Juvenile bud stage	4.297
	SRR8316897	Juvenile bud stage	1.681
	SRR8316894	Third green stage	6.441
	SRR8316900	Third green stage	33.104
	SRR8316901	Third green stage	25.521
	SRR8316898	Complete white stage	6.624
	SRR8316899	Complete white stage	48.158
	SRR8316903	Complete white stage	15.413
	SRR8316902	Silver flowering stage	2.591
	SRR8316904	Silver flowering stage	3.725
	SRR8316905	Silver flowering stage	0.983
	SRR8316906	Gold flowering stage	1.685
	SRR8316907	Gold flowering stage	1.010
	SRR8316908	Gold flowering stage	1.145
SRP132670	SRR6706286	Control	25.811
	SRR6706287	Light intensity 50%	33.891
	SRR6706288	Light intensity 20%	35.916
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.027
	CNS0095593	Slightly white alabastrum(diploid) 2	14.227
	CNS0095594	Slightly white alabastrum(diploid) 3	7.638
	CNS0095595	Whole white alabastrum(diploid) 2	14.387
	CNS0095596	Whole white alabastrum(diploid) 3	13.787
	CNS0095597	Whole white alabastrum(diploid) 4	13.882
	CNS0095598	Silvery flower (diploied) 1	1.208
	CNS0095599	Silvery flower (diploied) 2	1.769
	CNS0095600	Silvery flower (diploied) 3	1.273
	CNS0095601	Golden flower (diploid) 1	0.749
	CNS0095602	Golden flower (diploid) 2	0.464
	CNS0095603	Golden flower (diploid) 3	0.411
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.061
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.654
	CNS0095606	Slightly white alabastrum(tetraploid) 3	32.260
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.819
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.562
	CNS0095609	Whole white alabastrum(tetraploid) 3	22.788
	CNS0095610	Silvery flower (tetraploid) 1	3.195
	CNS0095611	Silvery flower (tetraploid) 2	1.349
	CNS0095612	Silvery flower (tetraploid) 3	0.701
	CNS0095613	Golden flower (tetraploid) 1	0.318
	CNS0095614	Golden flower (tetraploid) 2	2.467
	CNS0095615	Golden flower (tetraploid) 3	0.917
CRA001975	CRR073297	Stem 1	13.130
	CRR073298	Stem 2	14.641
	CRR073299	Stem 3	10.826
	CRR073300	Leaf 1	42.320
	CRR073301	Leaf 2	39.126
	CRR073302	Leaf 3	36.721
	CRR073303	Juvenile bud 1	40.253
	CRR073304	Juvenile bud 2	25.888
	CRR073305	Juvenile bud 3	54.412
	CRR073306	Third green 1	1.253
	CRR073307	Third green 2	2.971
	CRR073308	Third green 3	3.786
	CRR073309	Second white 1	0.049
	CRR073310	Second white 2	0.121
	CRR073311	Second white 3	0.220
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.055
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	3.838
	CRR073316	Gold flowering 2	2.570
	CRR073317	Gold flowering 3	3.333
	CRR073318	Tawny withering 1	3.052
	CRR073319	Tawny withering 2	1.843
	CRR073320	Tawny withering 3	1.851