Gene detail

Detail information of GWHGAAZE005467

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002276375.1	2.3263E-168	PREDICTED: uncharacterized protein LOC100256309 [Vitis vinifera]
Swissprot	tr\|Q9FDW1\|MYB44_ARATH	8E-49	Transcription factor MYB44
trEMBL	tr\|D7THE0\|D7THE0_VITVI	9E-169	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI30456.3}
TAIR10	AT3G09230.1	9E-86	myb domain protein 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	8410270	8413168	+
GWHAAZE00000002	mRNA	8410270	8413168	+
GWHAAZE00000002	exon	8410270	8410606	+
GWHAAZE00000002	exon	8412282	8413168	+
GWHAAZE00000002	CDS	8410270	8410606	+
GWHAAZE00000002	CDS	8412282	8413168	+

Transcript Sequence
>GWHTAAZE005475 ATGGACAAAGACACCGAAATAGACGATGCAACCGGCGTTGACGGCGAGGCTACGGCTGCGGACGACGGTCCCGGCGATGGAGATGCAGATTTGGTGGTGCTCGAAGACGGAAACGGAAATGGAAGCGGAGGTCAAGTTAGTAAAAAGAAGTCAGGGGACAGGGTTAAGGGTCCGTGGTCGCCAGAGGAGGACACGATACTGAGTCGGCTGGTAAGCAATTTTGGGGCGAGGAATTGGAGCTTGATCGCCCGTGGAATTCCAGGGAGATCCGGGAAATCGTGCCGTTTGAGGTGGTGTAATCAGCTGGACCCCGCCGTCAAGCGCAAGCCCTTCTCTGATGAAGAAGACCGTATCATACTTGCAGCTCACGCTATACACGGAAACAAATGGGCATCAATTGCAAGGCTTTTACCAGGAAGAACAGATAATGCAATAAAGAACCACTGGAATTCTACCCTAAGGCGTCGAGGCTTTGAACATGGCAAGCTCAAGATAGAATCCAGCACCAGCAATATGGTAGAAGACTTTAGTTTAGAAAAATCAAAAGCATCATCTGAAGAAACTCTATCATGTGGAGACGTCAATTCATTCAAGCCATTGGAAGAGAACGGGGATAATCCATACGAAAACGGGGTTCAGATAGAAGCTCAGTTGATCAACGAACCAACGGACCCACCTACACTTTTCCGCCCAGTGGCCCGTGTTAGTGCATTTAGCATTTATAATATTATGGACGGTCCAGAACCTGTGTTGCCATTTCCTAGTCAACATAGGCAAGATTTTGGTATCAGCAAGTTCCTCGAAGGAGCTTATGGTGAGCGATTGGTGCCTCATCGATGTGGCTATGGTTGCTGTGGAACCGCAAGTGATCAAAATAAAAAATCTCGAATCTCGTTGTTGGGCCCGGAATTTATTGATTATGCAGAACCGCCAGTCTTTCCAAGCCATGAATTGGCCGCTTTAGCCACAGAAATAAGCAATATCGCTTGGATTAAGAGCGGGTTAGAAAATAGCAGCGTTAAAGCAACGGATAATGTGACTAGCAAGGTGATGTCTAGAGGGGCTCGAGCGCAAATGGGACATTTTGAAGAGAGTAGAAAACCAGACCATTTACGTTTTGAAGAGGGAAAGAACAAATTAATGGGAATGATGAGTGGTGTGCTGTCAATCCCTGCTGCTAGGCAACCTTTTGCACAACCAGCAAACGTTGGGGGCCTCAGTTGA

Network for GWHGAAZE005467

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13921.7	Myb_DNA-bind_6	59	116	3.10E-15

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	15.260
	SRR3591706	second leaf	8.703
	SRR3591707	mature leaf	15.034
	SRR3591708	Shoot apex	13.841
	SRR3591709	Stem	17.190
	SRR3591710	White floral bud	15.849
	SRR3591711	White flower	17.834
	SRR3591712	Green floral bud	16.957
	SRR3591713	Yellow flower	17.631
SRP173429	SRR8316895	Juvenile bud stage	10.630
	SRR8316896	Juvenile bud stage	13.587
	SRR8316897	Juvenile bud stage	5.415
	SRR8316894	Third green stage	7.737
	SRR8316900	Third green stage	22.764
	SRR8316901	Third green stage	21.804
	SRR8316898	Complete white stage	10.338
	SRR8316899	Complete white stage	38.111
	SRR8316903	Complete white stage	15.100
	SRR8316902	Silver flowering stage	7.264
	SRR8316904	Silver flowering stage	11.586
	SRR8316905	Silver flowering stage	5.004
	SRR8316906	Gold flowering stage	21.396
	SRR8316907	Gold flowering stage	17.988
	SRR8316908	Gold flowering stage	19.619
SRP132670	SRR6706286	Control	36.272
	SRR6706287	Light intensity 50%	32.615
	SRR6706288	Light intensity 20%	32.372
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.552
	CNS0095593	Slightly white alabastrum(diploid) 2	14.929
	CNS0095594	Slightly white alabastrum(diploid) 3	14.509
	CNS0095595	Whole white alabastrum(diploid) 2	14.459
	CNS0095596	Whole white alabastrum(diploid) 3	13.441
	CNS0095597	Whole white alabastrum(diploid) 4	13.018
	CNS0095598	Silvery flower (diploied) 1	23.047
	CNS0095599	Silvery flower (diploied) 2	18.029
	CNS0095600	Silvery flower (diploied) 3	26.268
	CNS0095601	Golden flower (diploid) 1	22.040
	CNS0095602	Golden flower (diploid) 2	28.371
	CNS0095603	Golden flower (diploid) 3	26.381
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.832
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.364
	CNS0095606	Slightly white alabastrum(tetraploid) 3	27.893
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.873
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.929
	CNS0095609	Whole white alabastrum(tetraploid) 3	18.344
	CNS0095610	Silvery flower (tetraploid) 1	27.325
	CNS0095611	Silvery flower (tetraploid) 2	26.618
	CNS0095612	Silvery flower (tetraploid) 3	19.809
	CNS0095613	Golden flower (tetraploid) 1	15.650
	CNS0095614	Golden flower (tetraploid) 2	27.261
	CNS0095615	Golden flower (tetraploid) 3	18.855
CRA001975	CRR073297	Stem 1	18.815
	CRR073298	Stem 2	17.966
	CRR073299	Stem 3	21.094
	CRR073300	Leaf 1	19.181
	CRR073301	Leaf 2	24.403
	CRR073302	Leaf 3	23.394
	CRR073303	Juvenile bud 1	20.609
	CRR073304	Juvenile bud 2	23.055
	CRR073305	Juvenile bud 3	21.863
	CRR073306	Third green 1	8.512
	CRR073307	Third green 2	8.187
	CRR073308	Third green 3	9.796
	CRR073309	Second white 1	9.346
	CRR073310	Second white 2	11.167
	CRR073311	Second white 3	9.417
	CRR073312	Silver flowering 1	8.404
	CRR073313	Silver flowering 2	8.768
	CRR073314	Silver flowering 3	9.817
	CRR073315	Gold flowering 1	11.533
	CRR073316	Gold flowering 2	12.857
	CRR073317	Gold flowering 3	13.278
	CRR073318	Tawny withering 1	20.652
	CRR073319	Tawny withering 2	24.007
	CRR073320	Tawny withering 3	22.039