Detail information of GWHGAAZE005468


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002276280.10PREDICTED: probable serine/threonine-protein kinase At5g41260 [Vitis vinifera]
Swissprottr|Q9FHD7|Y5126_ARATH0Probable serine/threonine-protein kinase At5g41260
trEMBLtr|D7THE2|D7THE2_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI30458.3}
TAIR10AT5G59010.10Protein kinase protein with tetratricopeptide repeat domain

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene84251028429422-
GWHAAZE00000002mRNA84251028429422-
GWHAAZE00000002exon84293418429422-
GWHAAZE00000002exon84289818429237-
GWHAAZE00000002exon84287768428911-
GWHAAZE00000002exon84283378428470-
GWHAAZE00000002exon84281508428255-
GWHAAZE00000002exon84279088427993-
GWHAAZE00000002exon84268608427048-
GWHAAZE00000002exon84262588426422-
GWHAAZE00000002exon84260438426156-
GWHAAZE00000002exon84251028425519-
GWHAAZE00000002CDS84293418429422-
GWHAAZE00000002CDS84289818429237-
GWHAAZE00000002CDS84287768428911-
GWHAAZE00000002CDS84283378428470-
GWHAAZE00000002CDS84281508428255-
GWHAAZE00000002CDS84279088427993-
GWHAAZE00000002CDS84268608427048-
GWHAAZE00000002CDS84262588426422-
GWHAAZE00000002CDS84260438426156-
GWHAAZE00000002CDS84252778425519-
GWHAAZE00000002three_prime_UTR84251028425276-
Transcript Sequence

Network for GWHGAAZE005468

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF07714.18PK_Tyr_Ser-Thr1123223.10E-21
Protein Sequence

Gene family

Gene familysubfamily
Protein Kinases FamilyRLK-Pelle_RLCK-XII-1

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006468biological_processprotein phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf20.240
SRR3591706second leaf5.327
SRR3591707mature leaf0.544
SRR3591708Shoot apex15.799
SRR3591709Stem14.829
SRR3591710White floral bud17.341
SRR3591711White flower4.005
SRR3591712Green floral bud33.712
SRR3591713Yellow flower0.700
SRP173429 SRR8316895Juvenile bud stage 9.263
SRR8316896Juvenile bud stage 11.786
SRR8316897Juvenile bud stage 6.452
SRR8316894Third green stage 7.556
SRR8316900Third green stage 18.665
SRR8316901Third green stage 24.122
SRR8316898Complete white stage 7.277
SRR8316899Complete white stage 28.751
SRR8316903Complete white stage 11.727
SRR8316902Silver flowering stage0.807
SRR8316904Silver flowering stage0.795
SRR8316905Silver flowering stage0.261
SRR8316906Gold flowering stage 0.984
SRR8316907Gold flowering stage 0.620
SRR8316908Gold flowering stage 0.883
SRP132670SRR6706286Control15.186
SRR6706287Light intensity 50%19.867
SRR6706288Light intensity 20%24.191
CNP0000432CNS0095592Slightly white alabastrum(diploid) 122.314
CNS0095593Slightly white alabastrum(diploid) 238.716
CNS0095594Slightly white alabastrum(diploid) 319.717
CNS0095595Whole white alabastrum(diploid) 221.716
CNS0095596Whole white alabastrum(diploid) 319.030
CNS0095597Whole white alabastrum(diploid) 425.036
CNS0095598Silvery flower (diploied) 112.269
CNS0095599Silvery flower (diploied) 28.631
CNS0095600Silvery flower (diploied) 33.940
CNS0095601Golden flower (diploid) 19.346
CNS0095602Golden flower (diploid) 26.371
CNS0095603Golden flower (diploid) 35.742
CNS0095604Slightly white alabastrum(tetraploid) 115.044
CNS0095605Slightly white alabastrum(tetraploid) 211.060
CNS0095606Slightly white alabastrum(tetraploid) 331.661
CNS0095607Whole white alabastrum(tetraploid) 18.789
CNS0095608Whole white alabastrum(tetraploid) 26.940
CNS0095609Whole white alabastrum(tetraploid) 314.437
CNS0095610Silvery flower (tetraploid) 11.160
CNS0095611Silvery flower (tetraploid) 22.364
CNS0095612Silvery flower (tetraploid) 31.225
CNS0095613Golden flower (tetraploid) 10.418
CNS0095614Golden flower (tetraploid) 20.637
CNS0095615Golden flower (tetraploid) 30.121
CRA001975CRR073297Stem 117.957
CRR073298Stem 219.652
CRR073299Stem 323.019
CRR073300Leaf 139.861
CRR073301Leaf 237.177
CRR073302Leaf 337.393
CRR073303Juvenile bud 140.661
CRR073304Juvenile bud 287.765
CRR073305Juvenile bud 337.762
CRR073306Third green 10.942
CRR073307Third green 21.750
CRR073308Third green 31.874
CRR073309Second white 10.151
CRR073310Second white 20.232
CRR073311Second white 30.199
CRR073312Silver flowering 10.202
CRR073313Silver flowering 20.101
CRR073314Silver flowering 30.000
CRR073315Gold flowering 11.290
CRR073316Gold flowering 22.427
CRR073317Gold flowering 31.580
CRR073318Tawny withering 136.615
CRR073319Tawny withering 222.282
CRR073320Tawny withering 351.476