Gene detail

Detail information of GWHGAAZE005490

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002529866.1	1.6777E-141	uracil phosphoribosyltransferase, putative [Ricinus communis]
Swissprot	tr\|P93394\|UPP_TOBAC	2E-137	Uracil phosphoribosyltransferase
trEMBL	tr\|B9SV47\|B9SV47_RICCO	6E-142	Uracil phosphoribosyltransferase, putative {ECO:0000313\|EMBL:EEF32516.1}
TAIR10	AT3G53900.2	4E-100	uracil phosphoribosyltransferase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	8798234	8801434	-
GWHAAZE00000002	mRNA	8798234	8801434	-
GWHAAZE00000002	exon	8798234	8798602	-
GWHAAZE00000002	exon	8798690	8798737	-
GWHAAZE00000002	exon	8798840	8798895	-
GWHAAZE00000002	exon	8799031	8799098	-
GWHAAZE00000002	exon	8799611	8799672	-
GWHAAZE00000002	exon	8799783	8799831	-
GWHAAZE00000002	exon	8800231	8800312	-
GWHAAZE00000002	exon	8800464	8800541	-
GWHAAZE00000002	exon	8800691	8800749	-
GWHAAZE00000002	exon	8801084	8801162	-
GWHAAZE00000002	exon	8801336	8801434	-
GWHAAZE00000002	CDS	8801336	8801434	-
GWHAAZE00000002	CDS	8801084	8801162	-
GWHAAZE00000002	CDS	8800691	8800749	-
GWHAAZE00000002	CDS	8800464	8800541	-
GWHAAZE00000002	CDS	8800231	8800312	-
GWHAAZE00000002	CDS	8799783	8799831	-
GWHAAZE00000002	CDS	8799611	8799672	-
GWHAAZE00000002	CDS	8799031	8799098	-
GWHAAZE00000002	CDS	8798840	8798895	-
GWHAAZE00000002	CDS	8798690	8798737	-
GWHAAZE00000002	CDS	8798551	8798602	-
GWHAAZE00000002	three_prime_UTR	8798234	8798550	-

Transcript Sequence
>GWHTAAZE005498 ATTTCCTACTCTACTGGTCGCCGTCTTAGCGCTCTCTCGGTGGTTAAGTCTCAAACGACGGCGGCCGCTAAAAAACCCATCTCTCAAGATAGAATGCTGGTGTTTGTTCCTCCGCATCCGTTGATCAAGCACTGGGTTTCTGTTCTTAGAAATGAACACACTCCTCCCCCTATCTTTAAGAATGCCATGGCTGAGCTTGGGAGATTGCTCATGTATGAAGCATCAAGGGATTGGCTGCCGACTATCACAGGGGAGATTCAGTCACCCATGGGTGTTGCCGATGTAGAATTTATTGATCCAAGGGAACCTGTGGCGATTGTTCCAATCTTGAGAGCTGGTCTTGTTCTCGCAGAAAATGCATCGTCAGTCTTGCCAGCAACAAAGACATACCATTTGGGGATTAGCAGAGATGAGGAGACACTTCTGCCATTGGTATATTTGAACAAGTTACCTGAATTTTTTTCTGAAGGGACTCGAGTCTTTGTTGTGGATCCCATGTTGGCAACAGGCGGCACAATAGTTGCAGCTCTTGACCTGATAAAGGCACGTGGGGTTGACAACAAACAAATTAAAGTGGTGTCGGTTGTGGCAGCTCCTCCAGCCCTTCAAAAGCTTAGCGAAAAGTTCCCTGGGCTACATGTATATGCTGGGATAATTGACCCCACTGTTAACGAACAAGGGTTTATAATTCCAGGACTTGGAGATGCAGGAGACCGAAGCTTCAGTACATAAAACCGCCATTACCTTACACCTAGCCGGCCTTGTTATCATCTCTTCCCTTTTTGAGAAATTAGAGCATATCATCTAACAGAAGTTTCTGGTGGACTTTTAAAAGAGTTGTTTACCAATTTGAGCAATGTGTTGCAATGGATGCCTCTGTTGTACATTTTTGGTTTTGTTTTTGTTAGTTTAACTGTAAATTACTGCTCTTCAAGCCAGATTTGGATTTATCTTTTCATCTTTTAGGCTGTATGATCCTTAAGATTAAAACGCTACCGTAAATCCCATCACTACTTAACAACCTTCGAACACCATTAATGTTGGAGTTG

Network for GWHGAAZE005490

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14681.7	UPRTase	36	243	4.00E-65

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00761	upp, UPRT	Metabolic pathways	map01100
K00761	upp, UPRT	Pyrimidine metabolism	map00240

Gene Ontology

GO term	Ontology	Name
GO:0009116	biological_process	nucleoside metabolic process
GO:0006223	biological_process	uracil salvage
GO:0004845	molecular_function	uracil phosphoribosyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	22.089
	SRR3591706	second leaf	39.856
	SRR3591707	mature leaf	14.397
	SRR3591708	Shoot apex	48.383
	SRR3591709	Stem	10.570
	SRR3591710	White floral bud	6.287
	SRR3591711	White flower	5.393
	SRR3591712	Green floral bud	16.470
	SRR3591713	Yellow flower	2.062
SRP173429	SRR8316895	Juvenile bud stage	16.078
	SRR8316896	Juvenile bud stage	16.234
	SRR8316897	Juvenile bud stage	11.207
	SRR8316894	Third green stage	9.003
	SRR8316900	Third green stage	28.546
	SRR8316901	Third green stage	22.118
	SRR8316898	Complete white stage	1.946
	SRR8316899	Complete white stage	16.388
	SRR8316903	Complete white stage	4.393
	SRR8316902	Silver flowering stage	1.340
	SRR8316904	Silver flowering stage	1.187
	SRR8316905	Silver flowering stage	0.631
	SRR8316906	Gold flowering stage	1.354
	SRR8316907	Gold flowering stage	1.710
	SRR8316908	Gold flowering stage	2.518
SRP132670	SRR6706286	Control	17.418
	SRR6706287	Light intensity 50%	17.910
	SRR6706288	Light intensity 20%	18.883
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	20.395
	CNS0095593	Slightly white alabastrum(diploid) 2	17.268
	CNS0095594	Slightly white alabastrum(diploid) 3	11.498
	CNS0095595	Whole white alabastrum(diploid) 2	17.701
	CNS0095596	Whole white alabastrum(diploid) 3	23.605
	CNS0095597	Whole white alabastrum(diploid) 4	13.423
	CNS0095598	Silvery flower (diploied) 1	16.329
	CNS0095599	Silvery flower (diploied) 2	11.239
	CNS0095600	Silvery flower (diploied) 3	5.212
	CNS0095601	Golden flower (diploid) 1	14.581
	CNS0095602	Golden flower (diploid) 2	7.432
	CNS0095603	Golden flower (diploid) 3	9.115
	CNS0095604	Slightly white alabastrum(tetraploid) 1	21.734
	CNS0095605	Slightly white alabastrum(tetraploid) 2	18.048
	CNS0095606	Slightly white alabastrum(tetraploid) 3	27.150
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.591
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.379
	CNS0095609	Whole white alabastrum(tetraploid) 3	23.289
	CNS0095610	Silvery flower (tetraploid) 1	4.974
	CNS0095611	Silvery flower (tetraploid) 2	7.809
	CNS0095612	Silvery flower (tetraploid) 3	3.367
	CNS0095613	Golden flower (tetraploid) 1	2.481
	CNS0095614	Golden flower (tetraploid) 2	4.992
	CNS0095615	Golden flower (tetraploid) 3	0.781
CRA001975	CRR073297	Stem 1	26.504
	CRR073298	Stem 2	22.708
	CRR073299	Stem 3	25.278
	CRR073300	Leaf 1	19.067
	CRR073301	Leaf 2	24.604
	CRR073302	Leaf 3	20.550
	CRR073303	Juvenile bud 1	17.788
	CRR073304	Juvenile bud 2	8.089
	CRR073305	Juvenile bud 3	14.691
	CRR073306	Third green 1	0.779
	CRR073307	Third green 2	0.514
	CRR073308	Third green 3	1.464
	CRR073309	Second white 1	1.352
	CRR073310	Second white 2	0.380
	CRR073311	Second white 3	0.220
	CRR073312	Silver flowering 1	0.805
	CRR073313	Silver flowering 2	0.774
	CRR073314	Silver flowering 3	0.906
	CRR073315	Gold flowering 1	32.165
	CRR073316	Gold flowering 2	38.389
	CRR073317	Gold flowering 3	25.625
	CRR073318	Tawny withering 1	7.447
	CRR073319	Tawny withering 2	11.017
	CRR073320	Tawny withering 3	11.089