Gene detail

Detail information of GWHGAAZE005492

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_007026911.1	Pyrroline-5-carboxylate synthetase isoform 1 [Theobroma cacao]
Swissprot	tr\|Q96480\|P5CS_SOLLC	Gamma-glutamyl phosphate reductase
trEMBL	tr\|A0A061ERW5\|A0A061ERW5_THECC	Pyrroline-5-carboxylate synthetase isoform 1 {ECO:0000313\|EMBL:EOY07413.1}
TAIR10	AT2G39800.4	delta1-pyrroline-5-carboxylate synthase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	8848845	8854521	+
GWHAAZE00000002	mRNA	8848845	8854521	+
GWHAAZE00000002	exon	8848845	8848895	+
GWHAAZE00000002	exon	8849628	8849699	+
GWHAAZE00000002	exon	8849817	8849920	+
GWHAAZE00000002	exon	8850039	8850141	+
GWHAAZE00000002	exon	8850281	8850442	+
GWHAAZE00000002	exon	8850518	8850798	+
GWHAAZE00000002	exon	8850926	8851076	+
GWHAAZE00000002	exon	8851242	8851410	+
GWHAAZE00000002	exon	8851587	8851627	+
GWHAAZE00000002	exon	8851758	8851847	+
GWHAAZE00000002	exon	8851979	8852065	+
GWHAAZE00000002	exon	8852193	8852279	+
GWHAAZE00000002	exon	8852356	8852452	+
GWHAAZE00000002	exon	8852557	8852660	+
GWHAAZE00000002	exon	8852787	8852862	+
GWHAAZE00000002	exon	8852949	8853021	+
GWHAAZE00000002	exon	8853190	8853258	+
GWHAAZE00000002	exon	8853367	8853433	+
GWHAAZE00000002	exon	8853530	8853600	+
GWHAAZE00000002	exon	8854003	8854521	+
GWHAAZE00000002	CDS	8848845	8848895	+
GWHAAZE00000002	CDS	8849628	8849699	+
GWHAAZE00000002	CDS	8849817	8849920	+
GWHAAZE00000002	CDS	8850039	8850141	+
GWHAAZE00000002	CDS	8850281	8850442	+
GWHAAZE00000002	CDS	8850518	8850798	+
GWHAAZE00000002	CDS	8850926	8851076	+
GWHAAZE00000002	CDS	8851242	8851410	+
GWHAAZE00000002	CDS	8851587	8851627	+
GWHAAZE00000002	CDS	8851758	8851847	+
GWHAAZE00000002	CDS	8851979	8852065	+
GWHAAZE00000002	CDS	8852193	8852279	+
GWHAAZE00000002	CDS	8852356	8852452	+
GWHAAZE00000002	CDS	8852557	8852660	+
GWHAAZE00000002	CDS	8852787	8852862	+
GWHAAZE00000002	CDS	8852949	8853021	+
GWHAAZE00000002	CDS	8853190	8853258	+
GWHAAZE00000002	CDS	8853367	8853433	+
GWHAAZE00000002	CDS	8853530	8853600	+
GWHAAZE00000002	CDS	8854003	8854084	+
GWHAAZE00000002	three_prime_UTR	8854085	8854521	+

Transcript Sequence
>GWHTAAZE005500 ATGGATCCTACTCGGTCTTTTACCAAGACCGTCAAGCGCGTTGTTGTTAAGATAGGAACCGCCGTGGTTACGAGAGATGATGGAAGATTGGCAGTCGGAAGACTAGGCGCTATTTTTGAGCAGCTTGAAGCACTGAACTCGAGAGGCTATGAAATAATATTAGTGACTTCAGGTGCTGTTGGAGCTGGCCGCCAAAGACTTAAGTACCGCAGATTGATCAACAGCAGTTTTGCAGATTTGCAAAAACCAGAAGAAGAATTTTCTGGAAGAGCATGCGCTGCTGTTGGACAAAATGGTCTCATGGCACTGTATGACACTTTACTTAGTCAGCTAGATGTGACCTCTTCCCAACTCCTAGTCACAGATAATGATTTCAAGAATGCAGATTTTAGAGTTCAACTTTCTCAAACGGTGAATTCCTTGTTAGATTTAAGGGGTATTCCTATCTTTAACGAAAATGATGCAATTAGCACCAGAAGTGCTCCATATGAGGATTCGTCTGGTATTATTTTTTGGGATAATGACAGTTTGGCAGATCTACTGGCTATGGAACTAAAAGCAGACCTTCTATTGTTGTTAAGTGATGTAGAAGGCCTTTATAGTGGTCCTCCAAGTGAACCAGGTTCGAAGCTTATCCATACATACATTAGAGAAACACACGAAGGTCTAGTTACTTATGGAGATAAGTCGAGGAAGGGAAGAGGAGGAATGAATGCTAAAGTAAAAGCTGCAACTAATGCGGCTTATAGTGGTATCCCAGTTATCATTGCCAGTGGCTTTGTCGCTGACAACATTATAAAGGTCTTAAACGGAGAACGTGTTGGCACTCTCTTTCACAAAGATGCGCATTTATGGATTTCAATTTCGGAAGTTGGTGCTCATGAGATGGCAGTTGCTGCACGAGAATGCTCAAGAAAGCTTCAGGGTTTACCTTCAGAAGGTAGGAGGAAAATATTGCTGGATGTTGCTGATGCACTTGAGGCAAATGAAAGCTCCATCATGGCTGAGAATGAAGCTGATGTTGATGCCGCACGAGAAGCAGGATATGAAGAGTCACTAGTTGCTCGTTTGGCCTTAAAACCTGGCAAGGCAAGCATGGAAGAACCAGTAGGTCGCATTTTAAAGAGAACAGAGCTTGCAGATGGTCTCATCTTAGAGAAGACATCTTGTCCTTTGGGAGTTTTACTCATTATTTTTGAGTCTCGGCCCGATGCTCTTGTCCAGATAGCTTCATTGGCAATTCGAAGTGGGAATGGTCTACTATTGAAAGGAGGGAAAGAAGCTAAGCGATCAAACGCAATACTGCACAAGGTAATTACATCAGCTATACCAAGCACTATTGGAGATAAGCTTATTGGGCTCGTTACTTCAAGAGAGGAGATCCCCGATTTGCTCAAGCTTGATGACGTGATAGATCTTGTGATCCCTAGAGGAAGCAACAAACTTGTTTCCCAAATAAAGAGCTCGACAAAAATCCCAGTTCTTGGACATTCCGATGGAATTTGCCATGTTTACATCGATAAGTTGGCTAATATGGACAAGGCAAAGCGCATTGCCTATGATGCAAAGTTAGATTATCCTGCAGCTTGCAACGCCATGGAAACCCTTCTTGTACATCAAGATTTTGCCACAAATGGTGGACTCCAAGAACTTGTTTCAACACTTGAACACGAAGGGGTCATTTTATACGGTGGACCAAGAGCAACTTCTTTGTTGAATATTCCAGTGGCAACTTCTTTTAGTCACGATGCCCATACCGATTGCATTGTTACAGAAGACCATGAAGTTGCTGAATTATTCTTACATCAAGTTGACAGTGCTGCAGTTTTTCACAATGCAAGCACAAGATTTTGTGATGGTGCGCGGTTTGGACTTGGGGCAGAGGTTGGGATAAGTACAAGCAGGATTCATGCTCGAGGTCCAGTAGGAGTCGAAGGACTCTTAACAACACGATGGATTCTCAGAGGTAATGGAGAAGTGGTGAAGGGTGATCAAGGCGTTGCTTACACCCACAGAAACCTAGCAATAGAGTCATAGATGTGTTACAGAAGGAATTTCTCCTTGCAACTCTAGTTTTAATAACCCCCAATTCTTTATTAGATACTCGTAGTCATAGCCATATTTCTTGGGGTTTTGTTAGTGCGTGCTTTCAAGGCCCTTGATAAGAACCCAATCAGTGGCAAGAATAAGTGTCGAGAAGGCGTTGAAACCTTACAGTTTTTATTCTTATTGTTAGTGAGCACGATTTGCTTCTGACACACTGCATCGAATACTTTTCTCGAATTTTGTCGATATTATTTGCTGGATGGTGGAACAGAACCTAATGAACTTACTTATAGATATTACTACTCCTAAAAGACAGTTAATAATAGTGTGAGTTTATTTTGTGGAACATTATTATTATGAAAATTTTGTAATAAACCTGTCACAATTTTTTATGAAAATTCTGTGATACTTTTGAATGCTAGAGTATC

Network for GWHGAAZE005492

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00696.29	AA_kinase	12	258	1.00E-35
PF00171.23	Aldedh	293	544	2.00E-06

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12657	ALDH18A1, P5CS	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Biosynthesis of amino acids	map01230
		Arginine and proline metabolism	map00330

Gene Ontology

GO term	Ontology	Name
GO:0006561	biological_process	proline biosynthetic process
GO:0055114	biological_process	oxidation-reduction process
GO:0005737	cellular_component	cytoplasm
GO:0004349	molecular_function	glutamate 5-kinase activity
GO:0016491	molecular_function	oxidoreductase activity
GO:0016620	molecular_function	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
GO:0003824	molecular_function	catalytic activity
GO:0004350	molecular_function	glutamate-5-semialdehyde dehydrogenase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.191
	SRR3591706	second leaf	0.079
	SRR3591707	mature leaf	0.061
	SRR3591708	Shoot apex	0.030
	SRR3591709	Stem	0.243
	SRR3591710	White floral bud	5.310
	SRR3591711	White flower	0.824
	SRR3591712	Green floral bud	9.342
	SRR3591713	Yellow flower	0.480
SRP173429	SRR8316895	Juvenile bud stage	8.989
	SRR8316896	Juvenile bud stage	11.025
	SRR8316897	Juvenile bud stage	5.260
	SRR8316894	Third green stage	6.863
	SRR8316900	Third green stage	30.591
	SRR8316901	Third green stage	25.048
	SRR8316898	Complete white stage	11.656
	SRR8316899	Complete white stage	35.014
	SRR8316903	Complete white stage	14.366
	SRR8316902	Silver flowering stage	0.545
	SRR8316904	Silver flowering stage	1.514
	SRR8316905	Silver flowering stage	0.876
	SRR8316906	Gold flowering stage	1.015
	SRR8316907	Gold flowering stage	1.132
	SRR8316908	Gold flowering stage	0.770
SRP132670	SRR6706286	Control	20.570
	SRR6706287	Light intensity 50%	24.257
	SRR6706288	Light intensity 20%	28.893
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.159
	CNS0095593	Slightly white alabastrum(diploid) 2	4.597
	CNS0095594	Slightly white alabastrum(diploid) 3	6.266
	CNS0095595	Whole white alabastrum(diploid) 2	6.988
	CNS0095596	Whole white alabastrum(diploid) 3	10.197
	CNS0095597	Whole white alabastrum(diploid) 4	6.158
	CNS0095598	Silvery flower (diploied) 1	4.407
	CNS0095599	Silvery flower (diploied) 2	2.848
	CNS0095600	Silvery flower (diploied) 3	5.640
	CNS0095601	Golden flower (diploid) 1	2.884
	CNS0095602	Golden flower (diploid) 2	2.926
	CNS0095603	Golden flower (diploid) 3	2.921
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.008
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.241
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.197
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.975
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.694
	CNS0095609	Whole white alabastrum(tetraploid) 3	21.947
	CNS0095610	Silvery flower (tetraploid) 1	6.016
	CNS0095611	Silvery flower (tetraploid) 2	8.792
	CNS0095612	Silvery flower (tetraploid) 3	8.661
	CNS0095613	Golden flower (tetraploid) 1	1.606
	CNS0095614	Golden flower (tetraploid) 2	2.418
	CNS0095615	Golden flower (tetraploid) 3	0.974
CRA001975	CRR073297	Stem 1	14.385
	CRR073298	Stem 2	10.398
	CRR073299	Stem 3	6.034
	CRR073300	Leaf 1	15.145
	CRR073301	Leaf 2	11.525
	CRR073302	Leaf 3	13.933
	CRR073303	Juvenile bud 1	13.010
	CRR073304	Juvenile bud 2	15.757
	CRR073305	Juvenile bud 3	8.783
	CRR073306	Third green 1	0.713
	CRR073307	Third green 2	0.144
	CRR073308	Third green 3	0.401
	CRR073309	Second white 1	0.169
	CRR073310	Second white 2	0.072
	CRR073311	Second white 3	0.070
	CRR073312	Silver flowering 1	0.118
	CRR073313	Silver flowering 2	0.076
	CRR073314	Silver flowering 3	0.071
	CRR073315	Gold flowering 1	0.093
	CRR073316	Gold flowering 2	0.191
	CRR073317	Gold flowering 3	0.102
	CRR073318	Tawny withering 1	0.177
	CRR073319	Tawny withering 2	0.066
	CRR073320	Tawny withering 3	0.016