Gene detail

Detail information of GWHGAAZE005511

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006339019.1	0	PREDICTED: vacuolar amino acid transporter 1-like [Solanum tuberosum]
Swissprot	tr\|Q9FKS8\|LHT1_ARATH	6E-15	Lysine histidine transporter 1
trEMBL	tr\|M1ARN0\|M1ARN0_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400028760}
TAIR10	AT5G02180.1	3E-151	Transmembrane amino acid transporter family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	9180430	9186996	+
GWHAAZE00000002	mRNA	9180430	9186996	+
GWHAAZE00000002	exon	9180430	9180629	+
GWHAAZE00000002	exon	9181929	9182200	+
GWHAAZE00000002	exon	9182911	9183125	+
GWHAAZE00000002	exon	9183228	9183251	+
GWHAAZE00000002	exon	9183346	9183526	+
GWHAAZE00000002	exon	9183742	9183961	+
GWHAAZE00000002	exon	9184253	9184388	+
GWHAAZE00000002	exon	9184487	9184652	+
GWHAAZE00000002	exon	9185837	9185880	+
GWHAAZE00000002	exon	9185981	9186043	+
GWHAAZE00000002	exon	9186889	9186996	+
GWHAAZE00000002	CDS	9180430	9180629	+
GWHAAZE00000002	CDS	9181929	9182200	+
GWHAAZE00000002	CDS	9182911	9183125	+
GWHAAZE00000002	CDS	9183228	9183251	+
GWHAAZE00000002	CDS	9183346	9183526	+
GWHAAZE00000002	CDS	9183742	9183961	+
GWHAAZE00000002	CDS	9184253	9184388	+
GWHAAZE00000002	CDS	9184487	9184652	+
GWHAAZE00000002	CDS	9185837	9185880	+
GWHAAZE00000002	CDS	9185981	9186043	+
GWHAAZE00000002	CDS	9186889	9186996	+

Transcript Sequence
>GWHTAAZE005519 ATGACGGGACTGAAGCAGCTTGACGAAGAATTTGGATCGGATCGGATGATTGAGGTGGAAACAGATGACGAAGAAAATCAGGCCGAGAGGGATTGCGAAAACGATGACGAAGATGATACGGATTCCGATTGTACTGTCGCTTCACGCCACTCTTCCAATCCCGCCATCGACAGTTCTCTTTCATGGCCTCAAAGCTTCCGGCTGTCAATGGACAGGTATACAAGCGTGGCCTCGCCCTCCGTTAGCTTCTTAAAAGGCGGCTCTCTCCTCAGTCCAACATGCAAGAGATCAGATGCTTCTGTATTTCAATCTTCCCTCACAAAACCCTTTATATCCGAGACAAGCTTGGACAAAGAAGAAGTGCCTACCTCAACTCTTCCTGTAAAGTTATCTGCTACTTCAGACTCAAGGTTTACTCTCAGTGAGGTTCCACCACCAGAGTTGTGCTCTTATGGTCAATCGGTCCTCAACGCCATGAATCTTTTGTGCGGTATAGGAATCCTCTCAATGCCTTATGCACTCAAAGAAGGAGGGTGGCTGAGCCTCGTCTTTCTCTTTATTTTTGCTATCATTACTTGCTATACGGGTATTTTGTTAAAGAATTGTTTAGAAAGTTCTCCAGGCCTCCAAACCTATCCAGATATTGGACAGGCTGCTTTTGGGGCTGCTGGTCGCATTTGTATTGCTGCAGTCTTATACATAGAATTATATTCTTCTTGCGTGGAGTACTTAATTATGATGAGTGACAACTTGTCTGCATTGTTCCCAAATGCCCATGCGGATTTTGCTGGAATTTATCTTGATTCTTACCAAATATGTGCTATTGTGTCAACTATTGCGATTCTTCCAACAGTTTGGCTTCGAAACCTATCTTTGCTCTCATATATTTCAGCTGGGGGAGTATTGACATTGGCGGCAGTTGTTCTTTGCTTGTTATGGGTTGGAATTGTCGATGGAGTTGGATTCCATCCAGGTGGAAAAACTTTAGATGTTGCAAATCTGCCCGTCACCATTGGTTTGATTGGTTTCTGCTATGGCAGCCATTCAGTTTTTCCCAATATATATTCTTCCATGAAAGAACCGTCACTATTTCCATCTGTTCTTTTAATCAGCTTTTCCATGTCTGGGGTTTTGTATATGGGGGTAGCAGTATGCGGCTTCCTAATGTTTGGTGACTCGACCAAATCTCAGTTTACATTGAACATGCCAACAAAATTTGCTGCTTCTGAATTTGCAGCATGGACAGTGGTTATAGCCCCTGTGATGAAGTATGCCTTGACAATCACCCCAGTTGCTTTTGGTTTAGAGGAACTCTTGCCTTCAGCTCGACATAGATCTCATGGTGTATCAATTATAATCAGAACAATTTTAGTGATTTCAACCCTAGTCGTAGCTTTGACTGTTCCATATTTTGGATCTGTGATGGCATTAATTGGTTCTTTACTTGTGATGCTTGTAGCACTAATATTCCCATGTGTGTGTTATCTCCGCATACTTCATGGCCGACTAACGAAGTTTCAGATTGGAGTATGCAGTTCAATAGTAAGTGTGGGGTTGGTGAGTGCTATTATTGGGACATATTCAGCAATTACAAGCATAGCTGAGCAGAGGAACTATGGAAGTGAATGA

Network for GWHGAAZE005511

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01490.19	Aa_trans	150	530	5.00E-63

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15015	SLC32A, VGAT	GABAergic synapse	map04727
		Retrograde endocannabinoid signaling	map04723
		Synaptic vesicle cycle	map04721

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	1.293
	SRR3591707	mature leaf	0.382
	SRR3591708	Shoot apex	2.782
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	1.541
	SRR3591711	White flower	0.478
	SRR3591712	Green floral bud	9.020
	SRR3591713	Yellow flower	0.185
SRP173429	SRR8316895	Juvenile bud stage	3.380
	SRR8316896	Juvenile bud stage	9.864
	SRR8316897	Juvenile bud stage	4.262
	SRR8316894	Third green stage	3.047
	SRR8316900	Third green stage	9.555
	SRR8316901	Third green stage	10.952
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.037
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.087
	SRR8316905	Silver flowering stage	0.072
	SRR8316906	Gold flowering stage	0.156
	SRR8316907	Gold flowering stage	0.028
	SRR8316908	Gold flowering stage	0.080
SRP132670	SRR6706286	Control	2.566
	SRR6706287	Light intensity 50%	2.542
	SRR6706288	Light intensity 20%	2.695
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	10.289
	CNS0095593	Slightly white alabastrum(diploid) 2	6.733
	CNS0095594	Slightly white alabastrum(diploid) 3	12.003
	CNS0095595	Whole white alabastrum(diploid) 2	12.897
	CNS0095596	Whole white alabastrum(diploid) 3	20.087
	CNS0095597	Whole white alabastrum(diploid) 4	12.942
	CNS0095598	Silvery flower (diploied) 1	0.047
	CNS0095599	Silvery flower (diploied) 2	0.175
	CNS0095600	Silvery flower (diploied) 3	0.144
	CNS0095601	Golden flower (diploid) 1	0.059
	CNS0095602	Golden flower (diploid) 2	0.026
	CNS0095603	Golden flower (diploid) 3	0.002
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.032
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.908
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	19.515
	CNS0095608	Whole white alabastrum(tetraploid) 2	20.587
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.295
	CNS0095610	Silvery flower (tetraploid) 1	0.191
	CNS0095611	Silvery flower (tetraploid) 2	0.199
	CNS0095612	Silvery flower (tetraploid) 3	0.357
	CNS0095613	Golden flower (tetraploid) 1	0.087
	CNS0095614	Golden flower (tetraploid) 2	0.062
	CNS0095615	Golden flower (tetraploid) 3	0.209
CRA001975	CRR073297	Stem 1	2.935
	CRR073298	Stem 2	3.203
	CRR073299	Stem 3	1.565
	CRR073300	Leaf 1	4.969
	CRR073301	Leaf 2	4.414
	CRR073302	Leaf 3	2.972
	CRR073303	Juvenile bud 1	1.934
	CRR073304	Juvenile bud 2	2.659
	CRR073305	Juvenile bud 3	0.097
	CRR073306	Third green 1	0.156
	CRR073307	Third green 2	0.182
	CRR073308	Third green 3	0.285
	CRR073309	Second white 1	0.050
	CRR073310	Second white 2	0.024
	CRR073311	Second white 3	0.055
	CRR073312	Silver flowering 1	0.591
	CRR073313	Silver flowering 2	0.103
	CRR073314	Silver flowering 3	0.635
	CRR073315	Gold flowering 1	0.486
	CRR073316	Gold flowering 2	0.660
	CRR073317	Gold flowering 3	0.281
	CRR073318	Tawny withering 1	0.072
	CRR073319	Tawny withering 2	0.034
	CRR073320	Tawny withering 3	0.257