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Detail information of GWHGAAZE005529
Functional Annotation
Database
Orthologs
E value
Annotation
Nr
XP_011019860.1
0
PREDICTED: transcription factor AS1 [Populus euphratica]
Swissprot
tr|O80931|AS1_ARATH
2E-166
Transcription factor AS1
trEMBL
tr|A0A061ER46|A0A061ER46_THECC
0
Myb-like HTH transcriptional regulator family protein isoform 1 {ECO:0000313|EMBL:EOY07520.1}
TAIR10
AT2G37630.1
1E-121
myb-like HTH transcriptional regulator family protein
Location And Transcript Sequence
(JBrowse)
Scaffold
Type
Start
End
Strand
GWHAAZE00000002
gene
9454109
9455197
+
GWHAAZE00000002
mRNA
9454109
9455197
+
GWHAAZE00000002
exon
9454109
9455197
+
GWHAAZE00000002
CDS
9454109
9455197
+
Transcript Sequence
>GWHTAAZE005537 ATGAAGGAGAGGCAGCGGTGGCGAGCTGAAGAGGATGCTCTACTACGTTCATATGTCAAACAGTATGGCCCAAGAGAGTGGCACCTGGTCTCCCAGCGCATGAACACCCCCTTAAACCGAGACGCCAAATCCTGTTTGGAAAGGTGGAAAAACTACCTAAAACCCGGCATTAAAAAAGGATCCCTCACCGAAGAAGAGCAGCGCCTCGTAATCCGTCTTCAAGCCAAACACGGCAATAAATGGAAAAAAATTGCTGCTGAAGTCCCTGGCCGAACCGCCAAACGACTTGGAAAGTGGTGGGAAGTTTTTAAAGAAAAGCAGCAGAGAGAGCAAAAGGAAACCAATAAAGCAGTGGACCCGATTGAGGATGGAAAGTATGATCAAATTTTAGAGACGTTCGCGGAGAAATTGGTCAAAGAACGTTCTCCCCCAGCAATCTTCATGGCCACCTCAAACGGTGCGTTCCTCAACCACACGGACCCACCTCCCCCTTCCCCACCAAATATGCTTCCACCATGGCTTTCTAACACCAGTGCTGCCTCAACAGTTAGGCCACCCTCCCCTTCGGTCACCCTTAGCCTCTCGTCCACAACAGTGCCGCCTTCACCCACAATCCCGTGGTTACAATCTGAGCGGGGTCCCACTAACCCCCCTTATCTCGTGGGTCACTTGCCATCTCATGGGGCAGCGGTGGCGGCAGCAGCGCATGGAGAGAGCCTTATGATATCTGAACTTGTAGATTGCTGTAGAGAGCTAGAAGAAGGGCACCGCGCTTGGGCGGCCCACAAGAAAGAAGCAGCGTGGAGGCTGAGGAGGGTGGAACTTCAACTGGAATCGGAGAAGGCGTGTAGGAGGAGAGAGAAGATGGATGAGATAGAGGCGAAAGTGAAAGCACTACGGGAGGAGCAGAAGACTACACTGGAGCGGATTGAAGCTGAGTATAGGGAACAGTTGGCTGGATTGAGGAGGGATGCAGAAACCAAGGAGCAGAAATTGGCGGAGCAGTGGGCCGCAAAGCATTTGCGTATTACCAAGTTTCTTGAACAGATGGGATGCCGTCAAAGACTTCCAGAGCCTAATGGGAGGTAA
Network for GWHGAAZE005529
Network category
Network
Top300 PCC genelist
Coexpression Positive
Network
Top300 PCC genelist
Coexpression Negative
Network
Top300 PCC genelist
Functional Module
Module ID
Function Annotation
CFinderModule0251
Protein Structure
Pfam accession
Pfam name
Alignment start
Alignment end
E-value
PF13921.7
Myb_DNA-bind_6
7
68
3.20E-14
Protein Sequence
>GWHPAAZE005533 MKERQRWRAEEDALLRSYVKQYGPREWHLVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQRLVIRLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQKETNKAVDPIEDGKYDQILETFAEKLVKERSPPAIFMATSNGAFLNHTDPPPPSPPNMLPPWLSNTSAASTVRPPSPSVTLSLSSTTVPPSPTIPWLQSERGPTNPPYLVGHLPSHGAAVAAAAHGESLMISELVDCCRELEEGHRAWAAHKKEAAWRLRRVELQLESEKACRRREKMDEIEAKVKALREEQKTTLERIEAEYREQLAGLRRDAETKEQKLAEQWAAKHLRITKFLEQMGCRQRLPEPNGR
Gene family
Gene family
subfamily
Transcription Factors Family
MYB
KEGG pathway
KO
Enzyme
pathway
mapID
--
--
--
--
Gene Ontology
GO term
Ontology
Name
GO:0003677
molecular_function
DNA binding
Expression pattern
Expression pattern detail
SRP
Sample
Description
TPM
SRP075780
SRR3591705
youngest leaf
31.856
SRR3591706
second leaf
84.598
SRR3591707
mature leaf
33.742
SRR3591708
Shoot apex
151.134
SRR3591709
Stem
18.004
SRR3591710
White floral bud
40.732
SRR3591711
White flower
32.204
SRR3591712
Green floral bud
61.775
SRR3591713
Yellow flower
4.095
SRP173429
SRR8316895
Juvenile bud stage
43.522
SRR8316896
Juvenile bud stage
48.548
SRR8316897
Juvenile bud stage
20.436
SRR8316894
Third green stage
16.762
SRR8316900
Third green stage
46.876
SRR8316901
Third green stage
42.152
SRR8316898
Complete white stage
5.777
SRR8316899
Complete white stage
65.220
SRR8316903
Complete white stage
8.602
SRR8316902
Silver flowering stage
2.308
SRR8316904
Silver flowering stage
2.322
SRR8316905
Silver flowering stage
0.990
SRR8316906
Gold flowering stage
3.502
SRR8316907
Gold flowering stage
3.714
SRR8316908
Gold flowering stage
6.244
SRP132670
SRR6706286
Control
63.550
SRR6706287
Light intensity 50%
57.802
SRR6706288
Light intensity 20%
57.100
CNP0000432
CNS0095592
Slightly white alabastrum(diploid) 1
34.288
CNS0095593
Slightly white alabastrum(diploid) 2
38.837
CNS0095594
Slightly white alabastrum(diploid) 3
33.892
CNS0095595
Whole white alabastrum(diploid) 2
35.057
CNS0095596
Whole white alabastrum(diploid) 3
25.276
CNS0095597
Whole white alabastrum(diploid) 4
24.584
CNS0095598
Silvery flower (diploied) 1
64.420
CNS0095599
Silvery flower (diploied) 2
45.155
CNS0095600
Silvery flower (diploied) 3
13.619
CNS0095601
Golden flower (diploid) 1
60.480
CNS0095602
Golden flower (diploid) 2
24.078
CNS0095603
Golden flower (diploid) 3
24.917
CNS0095604
Slightly white alabastrum(tetraploid) 1
56.609
CNS0095605
Slightly white alabastrum(tetraploid) 2
48.857
CNS0095606
Slightly white alabastrum(tetraploid) 3
101.582
CNS0095607
Whole white alabastrum(tetraploid) 1
48.889
CNS0095608
Whole white alabastrum(tetraploid) 2
21.986
CNS0095609
Whole white alabastrum(tetraploid) 3
42.055
CNS0095610
Silvery flower (tetraploid) 1
9.386
CNS0095611
Silvery flower (tetraploid) 2
25.294
CNS0095612
Silvery flower (tetraploid) 3
16.160
CNS0095613
Golden flower (tetraploid) 1
4.835
CNS0095614
Golden flower (tetraploid) 2
7.995
CNS0095615
Golden flower (tetraploid) 3
0.740
CRA001975
CRR073297
Stem 1
69.129
CRR073298
Stem 2
70.832
CRR073299
Stem 3
86.328
CRR073300
Leaf 1
57.757
CRR073301
Leaf 2
62.632
CRR073302
Leaf 3
44.035
CRR073303
Juvenile bud 1
43.143
CRR073304
Juvenile bud 2
33.479
CRR073305
Juvenile bud 3
64.359
CRR073306
Third green 1
4.075
CRR073307
Third green 2
3.419
CRR073308
Third green 3
7.641
CRR073309
Second white 1
1.282
CRR073310
Second white 2
1.897
CRR073311
Second white 3
0.825
CRR073312
Silver flowering 1
0.458
CRR073313
Silver flowering 2
0.540
CRR073314
Silver flowering 3
1.259
CRR073315
Gold flowering 1
19.950
CRR073316
Gold flowering 2
22.666
CRR073317
Gold flowering 3
22.580
CRR073318
Tawny withering 1
21.036
CRR073319
Tawny withering 2
10.273
CRR073320
Tawny withering 3
20.746